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AT2G33710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 6058 Blast hits to 5797 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6019; Viruses - 6; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYVDeggNOG:ENOG410YY7DEMBL:AY136456EMBL:BT000236
EMBL:CP002685EMBL:U78721EnsemblPlants:AT2G33710EnsemblPlants:AT2G33710.1
entrez:817936ExpressionAtlas:P93007Gene3D:3.30.730.10GeneID:817936
Genevisible:P93007GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873hmmpanther:PTHR31190HOGENOM:HOG000057294
InParanoid:P93007InterPro:IPR001471InterPro:IPR016177PaxDb:P93007
Pfam:P93007Pfam:PF00847Pfscan:PS51032PhylomeDB:P93007
PIR:F84748PRIDE:P93007PRINTS:PR00367PRO:PR:P93007
PROSITE:PS51032ProteinModelPortal:P93007Proteomes:UP000006548RefSeq:NP_180927.1
SMART:SM00380SMR:P93007STRING:3702.AT2G33710.2SUPFAM:SSF54171
TAIR:AT2G33710UniGene:At.37896UniProt:P93007
Coordinates (TAIR10) chr2:-:14259271..14260652
Molecular Weight (calculated) 24298.30 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.82
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)