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AT1G43160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : related to AP2 6
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
related to AP2 6 (RAP2.6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 6219 Blast hits to 5840 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6203; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
EMBL:AC005687EMBL:AF003099EMBL:AY062847EMBL:AY114582
EMBL:CP002684EnsemblPlants:AT1G43160EnsemblPlants:AT1G43160.1entrez:840915
Gene3D:3.30.730.10GeneID:840915Genevisible:Q7G1L2GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006970
GO:GO:0009409GO:GO:0009414GO:GO:0009611GO:GO:0009651
GO:GO:0009658GO:GO:0009737GO:GO:0009751GO:GO:0009753
GO:GO:0009873GO:GO:0034605GO:GO:0045893Gramene:AT1G43160.1
hmmpanther:PTHR31190InParanoid:Q7G1L2InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G43160KO:K09286PaxDb:Q7G1L2Pfam:PF00847
Pfam:Q7G1L2Pfscan:PS51032PhylomeDB:Q7G1L2PIR:D96498
PRIDE:Q7G1L2PRINTS:PR00367PRO:PR:Q7G1L2PROSITE:PS51032
ProteinModelPortal:Q7G1L2Proteomes:UP000006548RefSeq:NP_175008.1SMART:SM00380
SMR:Q7G1L2STRING:3702.AT1G43160.1SUPFAM:SSF54171TAIR:AT1G43160
tair10-symbols:RAP2.6UniGene:At.10778UniProt:Q7G1L2
Coordinates (TAIR10) chr1:+:16263989..16264663
Molecular Weight (calculated) 21963.80 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.74
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSMLTNVVS GETEPSASAT WTMGHKRERE EFSLPPQPLI TGSAVTKECE SSMSLERPKK YRGVRQRPWG KWAAEIRDPH KATRVWLGTF ETAEAAARAY
101: DAAALRFRGS KAKLNFPENV GTQTIQRNSH FLQNSMQPSL TYIDQCPTLL SYSRCMEQQQ PLVGMLQPTE EENHFFEKPW TEYDQYNYSS FG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)