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AT2G38240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.938
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8819 Blast hits to 8740 proteins in 1012 species: Archae - 0; Bacteria - 1137; Metazoa - 112; Fungi - 1067; Plants - 5036; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38240-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AC003028
EMBL:AY062643EMBL:AY093302EMBL:CP002685EnsemblPlants:AT2G38240
EnsemblPlants:AT2G38240.1entrez:818403Gene3D:2.60.120.330GeneID:818403
GO:GO:0016491GO:GO:0046872Gramene:AT2G38240.1gramene_pathway:1.14.11.9
gramene_pathway:PWY-5152gramene_pathway:PWY1F-823gramene_pathway:PWY1F-FLAVSYNhmmpanther:PTHR10209
hmmpanther:PTHR10209:SF134HOGENOM:HOG000276735InterPro:IPR005123InterPro:IPR026992
InterPro:IPR027443KEGG:ath:AT2G38240OMA:IRNPSKWPfam:PF03171
Pfam:PF14226Pfscan:PS51471PhylomeDB:O80449PIR:T01256
PROSITE:PS51471Proteomes:UP000006548RefSeq:NP_181359.1SMR:O80449
STRING:3702.AT2G38240.1SUPFAM:SSF51197TAIR:AT2G38240UniGene:At.12463
UniGene:At.68423UniProt:O80449
Coordinates (TAIR10) chr2:-:16012723..16014666
Molecular Weight (calculated) 39683.70 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.39
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MATCWPEPIV SVQSLSQTGV PTVPNRYVKP AHQRPVFNTT QSDAGIEIPV LDMNDVWGKP EGLRLVRSAC EEWGFFQMVN HGVTHSLMER VRGAWREFFE
101: LPLEEKRKYA NSPDTYEGYG SRLGVVKDAK LDWSDYFFLN YLPSSIRNPS KWPSQPPKIR ELIEKYGEEV RKLCERLTET LSESLGLKPN KLMQALGGGD
201: KVGASLRTNF YPKCPQPQLT LGLSSHSDPG GITILLPDEK VAGLQVRRGD GWVTIKSVPN ALIVNIGDQL QILSNGIYKS VEHQVIVNSG MERVSLAFFY
301: NPRSDIPVGP IEELVTANRP ALYKPIRFDE YRSLIRQKGP CGKNQVDSLL LTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)