suba logo
AT2G24850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tyrosine aminotransferase 3
Curator
Summary (TAIR10)
Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.
Computational
Description (TAIR10)
tyrosine aminotransferase 3 (TAT3); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT2G20610.1); Has 40308 Blast hits to 40304 proteins in 3024 species: Archae - 944; Bacteria - 29187; Metazoa - 746; Fungi - 752; Plants - 1298; Viruses - 0; Other Eukaryotes - 7381 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G24850-MONOMERBioGrid:2374EC:2.6.1.-eggNOG:COG0436
eggNOG:KOG0259EMBL:AC006585EMBL:AK226395EMBL:AY085324
EMBL:BT002475EMBL:BT006593EMBL:CP002685EnsemblPlants:AT2G24850
EnsemblPlants:AT2G24850.1entrez:817022Gene3D:3.40.640.10Gene3D:3.90.1150.10
GeneID:817022Genevisible:Q9SK47GO:GO:0004838GO:GO:0006520
GO:GO:0009058GO:GO:0009611GO:GO:0009753GO:GO:0030170
Gramene:AT2G24850.1hmmpanther:PTHR11751hmmpanther:PTHR11751:SF363HOGENOM:HOG000239005
InParanoid:Q9SK47IntAct:Q9SK47InterPro:IPR004839InterPro:IPR005958
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424iPTMnet:Q9SK47
KEGG:ath:AT2G24850KO:K00815OMA:EVYDHFDPaxDb:Q9SK47
Pfam:PF00155Pfam:Q9SK47PhylomeDB:Q9SK47PIR:C84641
PIRSF:PIRSF000517PRIDE:Q9SK47PRO:PR:Q9SK47ProteinModelPortal:Q9SK47
Proteomes:UP000006548Reactome:R-ATH-71182RefSeq:NP_180058.1SMR:Q9SK47
STRING:3702.AT2G24850.1SUPFAM:SSF53383TAIR:AT2G24850tair10-symbols:TAT
tair10-symbols:TAT3TIGRfam:TIGR01265TIGRFAMs:TIGR01265UniGene:At.13978
UniProt:Q9SK47
Coordinates (TAIR10) chr2:-:10583070..10585152
Molecular Weight (calculated) 48821.60 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.08
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNGVTNCN ANANVWRFKG NGATSDAAAV TLRKLAFGMF KNCTMNSGKT ILFPTPGEPS AHSNFRTCPE AEEAVAAAAR SGMANSYAPS PGVFKARRAV
101: AEYLNGELPT KLKAEDVYIT GGCNQAIEIV IDSLAGNPSA NILLPRPGYP HYDARAVYSG LEIRKYDLLP ESDWEINLDG LEAAADENTV AMVIINPNNP
201: CGNVYTYDHL NKVAEMARKL GIMIISDEVY DHVVYGDKPF IPMGKFASIA PVITLGSISK GWVNPGWRVG WIAMNDPNGI FVSTGVVQAI EDFLDLTPQP
301: SFILQEALPD ILEKTPKEFF EKKIKAMRRN VELSCERLKD IPCLFCPKKP ESCSYLWLKL DTSMLNNIKN DFDFCTKLVS EESLILIPGV ALGAENWVRI
401: SIGTDESVVQ EIFDRLKGFY DRHAISKEAI KLSGHAINQI VVSVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)