suba logo
AT5G05600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: response to salt stress, response to karrikin; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G11180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G05600-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AB005241
EMBL:AY039893EMBL:AY133665EMBL:CP002688EnsemblPlants:AT5G05600
EnsemblPlants:AT5G05600.1entrez:830443Gene3D:2.60.120.330GeneID:830443
GO:GO:0005506GO:GO:0051213GO:GO:0080167Gramene:AT5G05600.1
gramene_pathway:1.14.11.9gramene_pathway:PWY-5152gramene_pathway:PWY1F-823gramene_pathway:PWY1F-FLAVSYN
hmmpanther:PTHR10209hmmpanther:PTHR10209:SF155HOGENOM:HOG000276735InterPro:IPR002283
InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT5G05600
OMA:CGRIMKVPfam:PF03171Pfam:PF14226Pfscan:PS51471
PhylomeDB:Q9FFF6PRINTS:PR00682PROSITE:PS51471Proteomes:UP000006548
RefSeq:NP_196179.1SMR:Q9FFF6STRING:3702.AT5G05600.1SUPFAM:SSF51197
TAIR:AT5G05600UniGene:At.68799UniGene:At.8725UniProt:Q9FFF6
Coordinates (TAIR10) chr5:+:1672266..1674602
Molecular Weight (calculated) 42179.20 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.48
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKNKIDVKI ETKKGSMDEW PEPIVRVQSL AESNLSSLPD RYIKPASLRP TTTEDAPTAT NIPIIDLEGL FSEEGLSDDV IMARISEACR GWGFFQVVNH
101: GVKPELMDAA RENWREFFHM PVNAKETYSN SPRTYEGYGS RLGVEKGASL DWSDYYFLHL LPHHLKDFNK WPSFPPTIRE VIDEYGEELV KLSGRIMRVL
201: STNLGLKEDK FQEAFGGENI GACLRVNYYP KCPRPELALG LSPHSDPGGM TILLPDDQVF GLQVRKDDTW ITVKPHPHAF IVNIGDQIQI LSNSTYKSVE
301: HRVIVNSDKE RVSLAFFYNP KSDIPIQPLQ ELVSTHNPPL YPPMTFDQYR LFIRTQGPQG KSHVESHISP R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)