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AT1G06620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.551
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G61400.1); Has 8339 Blast hits to 8299 proteins in 1003 species: Archae - 0; Bacteria - 1128; Metazoa - 122; Fungi - 867; Plants - 4923; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06620-MONOMERBioGrid:22412eggNOG:COG3491eggNOG:KOG0143
EMBL:AC007592EMBL:AK227676EMBL:BT006430EMBL:CP002684
EnsemblPlants:AT1G06620EnsemblPlants:AT1G06620.1entrez:837171Gene3D:2.60.120.330
GeneID:837171Genevisible:Q84MB3GO:GO:0016491GO:GO:0046872
Gramene:AT1G06620.1hmmpanther:PTHR10209hmmpanther:PTHR10209:SF122HOGENOM:HOG000276735
InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT1G06620
OMA:CRLIALEPaxDb:Q84MB3Pfam:PF03171Pfam:PF14226
Pfam:Q84MB3Pfscan:PS51471PhylomeDB:Q84MB3PIR:D86201
PRIDE:Q84MB3PRO:PR:Q84MB3PROSITE:PS51471ProteinModelPortal:Q84MB3
Proteomes:UP000006548RefSeq:NP_172147.2SMR:Q84MB3STRING:3702.AT1G06620.1
SUPFAM:SSF51197TAIR:AT1G06620UniGene:At.42332UniProt:Q84MB3
Coordinates (TAIR10) chr1:+:2025618..2027094
Molecular Weight (calculated) 40353.40 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.17
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSLPQVAA LDRSTLLKAF DETKTGVKGL IDAGITEIPS IFRAPPATLT SPKPPSSSDF SIPTIDLKGG GTDSITRRSL VEKIGDAAEK WGFFQVINHG
101: IPMDVLEKMI DGIREFHEQD TEVKKGFYSR DPASKMVYSS NFDLFSSPAA NWRDTLGCYT APDPPRPEDL PATCGEMMIE YSKEVMKLGK LLFELLSEAL
201: GLNTNHLKDM DCTNSLLLLG HYYPPCPQPD LTLGLTKHSD NSFLTILLQD HIGGLQVLHD QYWVDVPPVP GALVVNVGDL LQLITNDKFI SVEHRVLANV
301: AGPRISVACF FSSYLMANPR VYGPIKEILS EENPPNYRDT TITEYAKFYR SKGFDGTSGL LYLKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)