AT1G06620.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.551 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G61400.1); Has 8339 Blast hits to 8299 proteins in 1003 species: Archae - 0; Bacteria - 1128; Metazoa - 122; Fungi - 867; Plants - 4923; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:2025618..2027094 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40353.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 365 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MESSLPQVAA LDRSTLLKAF DETKTGVKGL IDAGITEIPS IFRAPPATLT SPKPPSSSDF SIPTIDLKGG GTDSITRRSL VEKIGDAAEK WGFFQVINHG 101: IPMDVLEKMI DGIREFHEQD TEVKKGFYSR DPASKMVYSS NFDLFSSPAA NWRDTLGCYT APDPPRPEDL PATCGEMMIE YSKEVMKLGK LLFELLSEAL 201: GLNTNHLKDM DCTNSLLLLG HYYPPCPQPD LTLGLTKHSD NSFLTILLQD HIGGLQVLHD QYWVDVPPVP GALVVNVGDL LQLITNDKFI SVEHRVLANV 301: AGPRISVACF FSSYLMANPR VYGPIKEILS EENPPNYRDT TITEYAKFYR SKGFDGTSGL LYLKI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)