suba logo
AT5G25190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G15360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXQ0eggNOG:ENOG4111RRZEMBL:AC006259EMBL:AY045659
EMBL:AY059664EMBL:CP002688EnsemblPlants:AT5G25190EnsemblPlants:AT5G25190.1
entrez:832590Gene3D:3.30.730.10GeneID:832590Genevisible:Q94AW5
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873Gramene:AT5G25190.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF4
HOGENOM:HOG000237624InParanoid:Q94AW5InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392KEGG:ath:AT5G25190OMA:EDGNANMPANTHER:PTHR31194
PaxDb:Q94AW5Pfam:PF00847Pfam:Q94AW5Pfscan:PS51032
PhylomeDB:Q94AW5PRINTS:PR00367PRO:PR:Q94AW5PROSITE:PS51032
ProteinModelPortal:Q94AW5Proteomes:UP000006548RefSeq:NP_197901.1SMART:SM00380
SMR:Q94AW5STRING:3702.AT5G25190.1SUPFAM:SSF54171TAIR:AT5G25190
UniGene:At.26169UniProt:Q94AW5
Coordinates (TAIR10) chr5:-:8707007..8707655
Molecular Weight (calculated) 20607.30 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.71
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT
101: QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)