AT3G02170.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : longifolia2 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
LONGIFOLIA2 (LNG2); BEST Arabidopsis thaliana protein match is: longifolia1 (TAIR:AT5G15580.1); Has 1276 Blast hits to 643 proteins in 119 species: Archae - 0; Bacteria - 21; Metazoa - 420; Fungi - 51; Plants - 161; Viruses - 6; Other Eukaryotes - 617 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:396208..399393 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 101633.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.99 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 905 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHCPATPV TVSGGAEKSL PPGERRGSVG ETNMESDKET ERSSTKKKKS AAKEKHRVSF ESSSRPSFSS 101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA 201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP 301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM 401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS 501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH 601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM 701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD 801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN 901: EVCFC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)