AT5G15580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : longifolia1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LONGIFOLIA1 (LNG1); BEST Arabidopsis thaliana protein match is: longifolia2 (TAIR:AT3G02170.1); Has 1694 Blast hits to 1037 proteins in 207 species: Archae - 0; Bacteria - 111; Metazoa - 481; Fungi - 158; Plants - 217; Viruses - 11; Other Eukaryotes - 716 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5068495..5071930 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104094.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.58 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 927 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSAKLLYNLS DENPNLNKQI GCMNGIFQVF YRQHYPPRRV TGDELKSLPS GKASDNVGDT NISADKKETE KSKKKKTAKE KQRGVSSESS SRLSFSSSPC 101: SSSFSSADIS TTASQFEQPG LSNGENPVRE PTNGSPRWGG LMMPSDIREL VRSSIHKETR TRDEEALSQQ PKSARANVSL LKESSPSRNS NEWSEGRRVV 201: KLKDSPRFSY DERETRKTGA KLKETPRLSL DSRSNSFRSA RSSCSPEPQE LVTGHRRTTS SVVAKLMGLE VIPDEPVTIQ NRENRFCDSP RPTSRVEVDL 301: QRSRGFDSIK KMMPAKFPMK ASPWAQVDGA KNQVKIPDAT TLTVYGEIQK RLSQLEFKKS EKDLRALKQI LEAMEKTQQL ISKDDDDNKT LCSSNFMQRN 401: NQPIPSAINT SSMNFKSSSI VVMKAATAPV FKDTGIAGSA SFSPRNVALP NVKVGNLRQA QKVIPRKQSA MDVTPRPGYY KGQTESTMKN TSTRPLQSKS 501: DMAKSGKIQK PSVSLRTPPK KLGFEKQSRP TSPKPELNKN QRQQLSRQQT ESASPRRKPG IKSRGLQQSE DRLSDESSDL RSLRSDSNVS LASNLDTEVT 601: SRYNYERNSD ITEQHTPKQR SPDLGMRSLS KPLKVTVEQP SPVSVLDVAF DEDDSPSPVR KISIVFKEDD NLSSEESHWM NKNNNLCRSI VWPESNTSLK 701: QPDAELTEGF MEDDAEFKNG DHKYISEIML ASGLLRDIDY SMISIQLHQA HLPINPSLFF VLEQNKTSNV SLQDNKHKGR GFGQQQTVNL VERSKRKLIF 801: DTINEILAHR FAAEGCTKQP SITLSISTQR THEKSSRGEE LLQTLCSEID RLQDNSKCIL DEDDEDLIWE DLQSHGMNWK EIEGETPGLV LDIERLIFKD 901: LIGEVVTSEF AAFPRMLSGQ PRQLFHC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)