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AT5G03150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At5g03150-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect.
Computational
Description (TAIR10)
JACKDAW (JKD); FUNCTIONS IN: protein binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of epidermal cell differentiation, regulation of meristem growth, regulation of cell division, root development, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 56579 Blast hits to 20803 proteins in 357 species: Archae - 0; Bacteria - 66; Metazoa - 49427; Fungi - 692; Plants - 856; Viruses - 6; Other Eukaryotes - 5532 (source: NCBI BLink).
Protein Annotations
BioGrid:17195eggNOG:COG5048eggNOG:KOG1721EMBL:AB005240
EMBL:AJ621494EMBL:AJ630493EMBL:AK228895EMBL:AL163002
EMBL:AY568665EMBL:CP002688EnsemblPlants:AT5G03150EnsemblPlants:AT5G03150.1
entrez:831919Gene3D:3.30.160.60GeneID:831919Genevisible:Q700D2
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0010075GO:GO:0045604GO:GO:0046872
GO:GO:0048364GO:GO:0051302Gramene:AT5G03150.1hmmpanther:PTHR10593
hmmpanther:PTHR10593:SF42HOGENOM:HOG000237608InParanoid:Q700D2IntAct:Q700D2
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880InterPro:IPR022755
InterPro:IPR033243KEGG:ath:AT5G03150OMA:MNSSAMGPANTHER:PTHR10593:SF42
PaxDb:Q700D2Pfam:PF12171Pfam:Q700D2Pfscan:PS50157
PhylomeDB:Q700D2PIR:T48336PRIDE:Q700D2PRO:PR:Q700D2
PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q700D2Proteomes:UP000006548
RefSeq:NP_195935.2scanprosite:PS00028SMART:SM00355SMR:Q700D2
STRING:3702.AT5G03150.1SUPFAM:SSF57667TAIR:AT5G03150tair10-symbols:JKD
UniGene:At.1592UniProt:Q700D2
Coordinates (TAIR10) chr5:+:745849..748678
Molecular Weight (calculated) 55203.90 Da
IEP (calculated) 10.20
GRAVY (calculated) -0.71
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)