AT5G62170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24973115..24975475 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 79220.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.28 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||
| Length | 703 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRDWSWLGG GKKKSSSKSK EEDIKPTQPP PPSLAGNTAT AAGCMSAVFN IFDFQHLQFP INHHHLHLPK GVDAPRNSLE STEEETSFSP TRKDGNLNIS 101: MGIKIKTKPQ ARSSSASLTP TETYSPSIKT PTLVARLMGL DLVPDNYRSS PTPSSSSSST LIDLKTPTRS SHAKKHRHYS LQRNSVDGGT RSLPETPRIS 201: LGRRSVDVNC YEHQRSSLHL RDNNINVFPE RESGINNVRL TRVKEIHEDK ENRSPREYAR QIVMQLKENV SRRRRMGTDI TNKETQPREV HESKKASSKT 301: TIITHDVSSS PRLGLTEVPK TKPTSLQTNN VASKILETTA MKVQDKTRLP TVHEEPQGTE KEKQRKSTKK CKKPENFKSR LVKPPQSMQE EPFVRSPAIN 401: NSNNNNNGHL LLIQGDKSSS KKTPLSINHL INFTSVPTIK KKDSQPHHKS SNLKLRETQT PRNRASSSEL PSFPSQSQHH IAPIAGGELE YITRTLRRTG 501: IDRDTPISYA KWFSPSHPLD PSIFYFLEHF AVTSTRPRNS PENLSLRCNR KLLFHLVDEI LADILKPHIN LKPWVCHYPI RSQRNLKGSE LIDELSRRIE 601: RFPLAKCLVL EDIDALVAGD FPEIESAFEE DGEGIVTEIE RGIFETLVTE TTTDYLATWM VKTAPLKRND DVSGTWGVHV TRYSTNVGSH HDSSSLRLRL 701: PRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)