AT2G25050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin-binding FH2 (Formin Homology) protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin-binding FH2 (Formin Homology) protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: Actin-binding FH2/DRF autoregulatory protein (TAIR:AT3G32400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10654108..10659383 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123233.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1111 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLEDEDYRVY VSRIMSQLRE QFPGASFMVF NFRDGDSRSR MESVLTEYDM TIMDYPRHYE GCPLLTMETV HHFLKSAESW LLLSQQNILL SHCELGGWPT 0101: LAFMLASLLL YRKQFSGEHR TLEMIYKQAP RELLQLMSPL NPLPSQLRFL QYISRRNVGS QWPPLDQALT LDCVNLRLIP DFDGEGGCRP IFRIYGQDPF 0201: MASDRTSKVL FSMPKRSKAV RQYKQADCEL VKIDINCHIL GDVVLECITL GSDLEREEMM FRVVFNTAFL RSNILTLNRG EIDVLWNTTD RFPKDFSAEV 0301: IFSEMGAGKK LASVDLPHME EKDVLPMEAF AKVQEIFSEA EWLDPNSDVA VTVFNQITAA NILQESLDSG SPRSPDSRSL LESALEKVKE KTKLMISENI 0401: VSSPDTSSPE KEKDTMSSHK SYADPNSILK KVDESRGLRV SVQRNVHSKI FSPRMVQSPV TSPLPNRSPT QGSPASISRF HSSPSSLGIT SILHDHGSCK 0501: DEESTSSSPA SPSISFLPTL HPLTSSQPKK ASPQCPQSPT PVHSNGPPSA EAAVTSSPLP PLKPLRILSR PPPPPPPPPI SSLRSTPSPS STSNSIATQG 0601: PPPPPPPPPL QSHRSALSSS PLPPPLPPKK LLATTNPPPP PPPPLHSNSR MGAPTSSLVL KSPPVPPPPA PAPLSRSHNG NIPPVPGPPL GLKGRGILQN 0701: LKGQGQTRKA NLKPYHWLKL TRAVQGSLWA EAQKSDEAAT APDFDISELE KLFSAVNLSS DSENNGGKSG RRARPKVEKV QLIELRRAYN CEIMLSKVKI 0801: PLPDLMSSVL ALDESVIDVD QVDNLIKFCP TKEEAELLKG FTGNKETLGR CEQFFLELLK VPRVETKLRV FSFKIQFHSQ VTDLRRGLNT IHSAANEVRG 0901: SAKLKRIMQT ILSLGNALNH GTARGSAIGF RLDSLLKLTD TRSRNSKMTL MHYLCKVLAE KLPELLNFPK DLVSLEAATK IQLKYLAEEM QAISKGLEKV 1001: VQEFTASETD GQISKHFRMN LKEFLSVAEG EVRSLASLYS TVGGSADALA LYFGEDPARV PFEQVVSTLQ NFVRIFVRSH EENCKQVEFE KKRAQKEAEN 1101: EKLKKGVYNE N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)