AT5G49430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WD40/YVTN repeat-like-containing domain;Bromodomain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT2G47410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20037338..20045454 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 186930.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1677 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALRKNTPKG DSVSLPMKPL NFSRKLPGNV QIPDPDIVQS VAPNIDLDLR EVYFLMLHLL SSGPCQKTYA LLRHELLEHE LLPRRYHAWY SRSGLPSGDE 0101: NDDGNSFPLN YTELAKRYSH VKKDHLVELL KQLVFVSNRP NPSRGIGDGN KMIGAGVPTL LGTGSFSLLS SDKEIVGSDL KPPPIGMRWP HMHADQVRGI 0201: SLREIGGGFA RHHRAPSIRA ACYVIAKPSS MVQKMQNIKR LRGHRNAVYC AILDRSGRYV ITGSDDRLVK VWSMDTAYCL ASCRGHEGDI TDLAVSSNNI 0301: FIASASNDCV IRVWRLPDGL PVSVLRGHTG AVTAIAFSPR PGSPYQLLSS SDDGTCRIWD ARGAQFAPRI YVPRPPSPDG KNSGPSSSNA QQSHQIFCCA 0401: FNASGSVFVT GSSDTLARVY SVWSANKTNT DDPEQPNHEM DVLAGHENDV NYVQFSGCAA GSKFSVTDYS KDENVPKFKN SWFCHDNIVT CSRDGSAIIW 0501: IPRLRRSHGK SCRWTRAYHL KVPPPPMPPQ PPRGGPRQRI LPTPRGVNMI AWSLDNRFVL AAIMDCRICV WNASDGSLVH SLTGHTASTY VMDVHPFNPR 0601: IAMSAGYDGK TIVWDIWEGI PIQIYDISHY KLVDGKFSPD GTSIILSDDV GQLYILSTGQ GDSQKDAKYD QFFLGDYRPL IQDTYGNVLD QESQLQPYRR 0701: NMEDPLCDSG MIPYEEPYQT TFQKRRLGAL GKEWRPSSLK LAVGPDITLD RDYQMPPLAD LDLAEPLPEF IDVMEWEPEV DILSDENDSE YNVPEEYSSG 0801: KEQECLNSST SGESGSSSGE SYEDDDHQNS LRRSKRKKHK KEAGIMTSSG RRVKKRNFDE LEGAPSNKKR TRKSRSGRKE SKRKSSKSKS SRPRRAAARN 0901: ALSWFSKITG TSKDAEEEEV SELSDSSESE STTQDSGTGD SELEVALLNG HGKQSKGKTI LVCDSDDGAQ QCDIRETHTA ERRRLVLRFP VRNSDKLTLL 1001: ENLPGSSCDV PSPTLGNGCT EDSRIPGNQF EGLDVSKVKW GMVKARTTKR IRGEAISSHE LMGSDPEGKE NNVKEDSNHR GNGVTAPSCL ELKTDIDDMA 1101: VDTDTVISNG LPNGGKRYPE LDGSPSRVAD DKASNSSQNV THRHDLIDSL PPISTTLKIR SKRVSRAPDT SLRQEGKSLS IDQETGGSDA LNDGFEDAKC 1201: DLTLDCQKDG VVGTEISLRN DCVLELNPQI CDALSIANDV PVSHSHPKRM FDFVYRRKSR KHKNNLDRDA ALTKEVSPGS CSQDHGSGSK SHEGASNGFH 1301: GTELNGLEKS EGSLTHIQDK ISDSRGNQNS QEELRSASGA TLRLRSTRNR KSTYPFSETK PIETKKPQQL IENVSWLTLS IHEEGSRYIP QMGDEVAYLR 1401: QGHQEYLNFS SLREVAPWTS IKGGNIKAVE ICKVESLEYA TLPGSGDSCC KMILKVIDPN SEVFNKAFKL TLPEVVTFPD FLVERSRYEA AIQRNWTCRD 1501: KCKVWWRDEG EEDGSWWEGR ILAVKPKSPD FPDSPWERYT VKYKSDPAET HLHSPWELFD ADTKWEQPHI DDEQRNRLLS ALTKLETSDK RTQDSFGLRK 1601: LNQTVGNSSY SNRFPVPLSL EVIRSRLENN YYRSVEALRH DVSVMLSNAE TFFGRNKSVA AKISNLSNWF DRTLPSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)