AT2G25660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 2410 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2410 (emb2410); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF490 (InterPro:IPR007452); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10916456..10927390 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 240358.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.62 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 2166 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSLRLQNPFL STPLLHGSFN RREKRINVAR RAFRSKRIYS EKKQNDWLAK VAKFSQFCGK NVQLLRKSLD SRSRMEVKCL KEPFVRSKDL VRSLAPVWEE 0101: GLFFLRCSVF FAVISGVCLL VWYGQNKARV FVETKLLPSV CSVLSETIQR EVDFGKVRRV SPLCITLEAS SIGPHGEEFS CGEVPTMKVC VRPFASLRRG 0201: KIVVDAILSN PTVLVAQKKD FTWLGIPLSD TTLPSHLSSE EGIDFRTKTR RVSREEAGIR WDEERDNDAR KAAEIGYIVP CKNYSQAKDN AVKHDRRFTE 0301: IANPNSFICM DEKMHSAEQH CMDPGVEYDV KHAELEKSFG IKIPGSGLKF LSKMLKVPRK YKFKWNSKSH KNSMSNISAK KRILERSASA ALSYFHSLSQ 0401: QKLDEPSVLS TNYDGLSLDM LLVKGDREIS NQYDRHVPYG EQSLANDLDG KGYRVRGKRL LGVKKASTLD KFTVSCDPFL MTVDRLCALL QTKRSPSVED 0501: IVNSSESETL SSQRGDISMN VVNQNTDDVP HGNRSGNQPR DFTFKKHEHQ PVANHWRPSW PRNKKLKEAV FNILTGSSKK LTGRADPNAP HLSDELEKLP 0601: AVYVEKTLPV MLDSVQFKGG TLLLLAYGDT EPREMRNVHG HVKFQNHYGR VYVQLGGNCN MWRSDVTSED GGLLSVDVFV DTVEQNWHAN LNVANFFVPI 0701: FERILEIPIE WSKGRATGEV HLCMSRGESF PNLHGQLDVT GLGFHINDAP SSFSDVSASL SFRGQRIFLH NANGWFGKVP LEASGDFGIH PDEGEFHLMC 0801: QVPYVEINAL MKTFKMKPLF FPLAGSVTAV FNCQGPLDAP VFVGSCMVSR KIAYLSPDLP TSLAYEAMLK NKEAGAVAAF DRVPFSYLSA NFTFNTDNCV 0901: ADLYGIRATL VDGGEIRGAG NAWICPEGEV DDTALDVNFS GNISFDKVLH RYMPEYFNIG MLKLGDLTGE TKLSGALLKP RFDIKWAAPK ADGSLTDARG 1001: DIVISHDNII VNSSSVAFDL FTKLDTSYHD PCLSHQDFTQ GEAMPFVVEG LDLDLRMRGF EFFSLVSSYP FDSPRPTHLK ATGRIKFLGK IKRHSTTKDG 1101: DVGSDKCEDA AAISSLDGDI SISSLKLNQL ILAPQLSGRL SVSRDHVKLD AAGRPDESLT LDFIGPLQPN SDENVQSGKL LSFSLQKGQL RANACFQPQQ 1201: SATLEIRNFP LDELELASLR GLIQKAEIQL NLQKRRGHGL LSVIRPKFSG VLGEALDVAV RWSGDVCFML SGRLEVMITV EKTILEQSNS RYELQGEYVL 1301: PGSRDRDLGQ KEAGSFLMRA MTGHLGSVIS SMGRWRMRLE VPKAEVAEML PLARLLSRST DPAVHSRSKD LFIQSVQNLC LQAENLRDLL EEIRGYYTPP 1401: SEVVLEDLSL PGLAELKGHW HGSLDASGGG NGDTLAEFDF HGDDWEWGTY KTQRVLATGS YNNDDGLRLK EMLIQKGNAT LHADGTLLGP KTNLHFAVLN 1501: FPVSLIPTLV EVVESSATDI VHSLRKLLSP IKGILHMEGD LRGSLEKPEC DVQVRLLDGA VGGIDLGRAE VFASLTSNSR FLFNSNFEPF VQNGHVHIQG 1601: SVPVSFSQKN MSEGEVSETD RGGAVKIPSW AKEKEDDEKR TSRDRSEERW DSQLAESLKG LYWNILDAGE VRLEADIKDG GMTLLTAISP YANWLQGNAD 1701: IRLQVGGTVD HPVLDGSASF HRASISSPVL RKPLTNFGGT LHVKSNRLCI TSLESRVSRK GKLVVKGNLP LRSNEASAGD GIELKCEVLE VRAKNFLSCQ 1801: VDTQLQITGS MLQPTISGNI KLSQGEAYLP HDKGGGAAPL NRLAANQYSI PGAAINQAVS SRYFARFFGT ERASSGMKFS QSTGKSNSVE KEIEEVKMKP 1901: NMDIRLSDMK LVLGPELRIM YPLILNFAVS GELELDGMAH PKFIKPKGVL TFENGDVNLV ATQVRLKREH LNVAKFEPEH GLDPLLDLAL VGSEWQFRVQ 2001: SRASNWQDKL VVTSTRSVEQ DALSPSEAAK VFESQLAESI LEGDGQLAFK KLATATLGTI MPRIEGKGEF GQARWRLVYA PQIPSLLSVD PTVDPLKSLA 2101: SNISFGTEVE VQLGKRLQAS VVRQMKDSEM AMQWTLIYQL TSRLRVLLQS APSKRLLFEY SATSQD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)