AT3G50380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1162) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
INVOLVED IN: protein localization; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); Has 365 Blast hits to 355 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 111; Plants - 61; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18686527..18700533 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 343769.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 3072 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTFLRNWVRR RLRTLLLPFS RDEPDLQVEL GFTDTLITLR SFRFDVSQLN QLFDESNFQF EKFTVDQLVV SFSVWSAPAI KFEIRGVNVK LSARGTDEGS 0101: SRRKRASSDT VANEIKKVLS SIDPKGCVLH DILEKMLGRS TSQISKLKTS FSNLILRHFR IQIHGINVQV CLPGSSDLSC LMEINELRSD SENFGNLSLV 0201: RSSAAAVLFP LRRSSFTLSC FGFNIGYKRD NEIVDLCGFD SLVMLITLHN LQLVDLVVRV PELSFSFRPT DLPVLMGLAN LSSKDSNYVR NGRYLWKVAA 0301: RRTGLMISPH SVSFQNLVSV VILWLRYVNA YEYLLSLAGY SRKMPEKSLL WKFSENKRHF VTARRKWEMI CNIEKELPAE AIARARRVAR YRACLNSQDA 0401: DDDYDESSLY GHFKYLSKTT WVLAYIWRLI SRTFWSIACF LWLNKLLTQE LQTDRNNEDD SECVSLEFHA VVNLGKLSVT CYPEKIISSF MTSKDSTGHV 0501: DSNIVMLCLS VDEFLVLYTV GCLTQYLSAS CGKLKVESSS FKNTSRFMKS TKDPSSSSEG NKKHMREDVK TILDMDPAQQ ISKTVNNHGS DQHEGMLHLQ 0601: NLLREMWLNW NSNCMKLDKS TFTISDKPCL LVDIKSCMAY EVVGNQDSEF WKCSMVLGKL DIVFEYSSLF SLALLIWQIE WAQKLLVDDY TGEVHSSSLV 0701: TGGVDPEMAS YDEYGIYRRS IELSLHRVHP ERQIQVGILL GGPQIKLLVE KAEEVNTLIG KKDILLFDFH DFEFVIWPTY KSDVVSSRMF QGPDNIRTDR 0801: PLLQELGLSD TVIPSYEKYV SQGWNSLSSH LRFSGFDCSF CKMAVKNWSQ VFVVRPVTIC FSSLSEAIMD FSIGLDVFVL GLTIVTKPDD LNAYFQMLLS 0901: LVSGLSRGLS GLSSGGHSSG QEFLRSDAVN VEHEIERNPC KTLFVVKASI KLKDIDVIFD VPAVDDKFER LVELDDTKIW SSVQEACIEL SVEEHKCLIN 1001: VDLCKLQSVL FKFEGNIWKS SGNFITESLL FRSHDILFEA CLSSCLLSVS MDCSSPSALG DASTANEPST NNVQVQREVK TLDSASDLLP SNSIRWMHIN 1101: LALTDLLVAK GSTKNVLVDV RRSSKFVTSV SIGRRFQSIS CSVEGVLFVL EPKALIGLIH GYSTYLYLIS SKVSVIQNSA PVLEKFEADS SVTEISIPSQ 1201: QENGYPVEAF SIDVAQFALG FVCDDEYGAI REIVLEITLH SSLDSAGGEQ KFLCEVSRLS VLSKILESVE RDINITQFSS PAFSSESSSF LPGTPLETSF 1301: QQSDVISSGD STSVSGDFNS LREFSANSNL QEEFHSRYNN YILEDLRVSA SVKKRENTGH QFSQAWAGAC SVLGFDITIS LSELQMVLSM LSLFAAIPGG 1401: DSAHASLERP SSFNSESERS FESVVPDGAI VAIQDINQHM FVTVEDGGNK CVVTGTLHYS LVGERALFRV SYHRHQGWNS STLWFSLTSL YAKNNKGEPL 1501: RLNYHSSSDI VNVSGLYDNA PTLFRASSGE SENYKGDIDW ETYRKLVKDT FYLVNKKSDS AVAFIDGFPE FVRKPGNPFK FKVFHESLAT RSLTPVVPSE 1601: IHESETHSVM VDSSPPSITV TIDGVSLTIV HELSETRDRF PLFRGSVNIT QLTVQMLSSK VRIMSTSNIL VLYFDAQTNQ WREFIHPVEV SAFYRSTFQT 1701: RDLNNTMHKV PTHIYCRIGK LEVFLTELSL DMLLFLLGKL EFAGPFSVKT SAILSNCCKI ENLSGLDLIC RFNEKQTATV GRKQTAAIFL RHSMNHQQEA 1801: SPVAAVQLSS GKFITSSINV SLLEARTLAW RTRIISLLDS RSHPGPFVVV DIKKGLEDGL SISVSPLTRI HNETSLPIEI RFQRSKQKRD EFASVPLKPG 1901: GSIDDSVAAF NAISSSGDMK KALTSLAVGN FSLSFRPESF ETLFEGEKSL GSEWSEELEG GKAVRLTGIF DKLSYGVKKA LSIESVKVSL TTTYCSVTSE 2001: SQCVGKVHFL IHSIRREVSI IRPDASSDVL EKQKACIALR EQKEIFLLPT VQVSNFLSSE AAILLTETDQ NTSMERHSIG KHATIQSGKT IDFYVNPDMI 2101: YFRVTLTTSQ ASCKPVNSGQ WVKKLQKQKN DAQCLDVDLD FSGGKYCASL RLSLGKRGIL EAAVFTSYIL KNDSDCTLFF FPPDQKPLSR EDMEKLDHIV 2201: PPEFGLYLPP KTEGSWFLRS RKVGVILADG HGATEAVLDL DALSGLTEIS LGTKDESGFR HLVINESEET INIRQHYFQD DSVGIITIKS KQRAALRLQE 2301: ETIQKKELHL FENFIKKHGS DSANSLIFIQ FRKQSGEAGR GAIEFASVNV TEEGSTLAVH FQKPPNTPPP YRIENFLHSA SLTYYQKDSS EIEVLGPGSG 2401: ADYAWDDMTL PHKLVVIVDG MIPLREVSLD KVRPWKPLFK ATQHRSIASH LMMKKKAKDH KTADKELSRI PMVKVGYEVY ADGLTRVIRI CEVSESLKGD 2501: SAFQSRSKIQ FRVTHLGVHL LEKVKQNAEE KTVVSYSPIL VARLENVGLH SMFTDQQKFN QLCIEALNVD HKWAGAPFAA MLRQHQSSSS DANGCLFKCV 2601: FILVSSGSSV TQVKHSSIVL QPVNLNLDEE TLMRVVAFWR SSLSTNTQSS QYYFDHFEIH PIKITANFVP GSSYSSYNSA QETLRSLLHS VVKVPHIKNM 2701: VVELNGVLVT HALITVRELL LRCVKHYSWY AMRAIYIAKG SPLLPPAFAS MFDDFSSSSL DAFFDPSRGL VNVPGLTVGT FKLLSKLIDN KGLSGTRRYF 2801: GDLGKTLRTA GSNVVFVALT EISDSVLRGA EMKGVDGLVS GFHHGILKLA MEPSVIGTAL MEGGPDRTIK LDRNPGIDEL YIEGYLQAML DTMYRQEYLR 2901: VKVIDDQVFL KNLPPSNSLI DEMIDRVKDF LESRGLLKGD PSSSRPRRRL HGDKEWKIGP TVLTLCEHLF VSFAIRILKQ HATKAITSLR PKKEEAEAET 3001: SDSGSNTAMV PVVSDNKKKK MKFMWKAGIG NFVASGIVAY IDGRLCRQIP NPIARRIVSG FLLSFLDKSS EQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)