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AT5G47820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.
Computational
Description (TAIR10)
FRAGILE FIBER 1 (FRA1); CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G50240.1); Has 53631 Blast hits to 37823 proteins in 1811 species: Archae - 386; Bacteria - 4938; Metazoa - 26865; Fungi - 4658; Plants - 3439; Viruses - 113; Other Eukaryotes - 13232 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0244EMBL:AB016886EMBL:AY158083
EMBL:AY158084EMBL:CP002688EnsemblPlants:AT5G47820EnsemblPlants:AT5G47820.1
EnsemblPlants:AT5G47820.2entrez:834833Gene3D:3.40.850.10GeneID:834833
Genevisible:Q8GS71GO:GO:0003777GO:GO:0005524GO:GO:0005737
GO:GO:0005871GO:GO:0007018GO:GO:0008574GO:GO:0009832
GO:GO:0010215GO:GO:0030705GO:GO:0055028Gramene:AT5G47820.1
Gramene:AT5G47820.2hmmpanther:PTHR24115hmmpanther:PTHR24115:SF463HOGENOM:HOG000030222
InterPro:IPR001752InterPro:IPR019821InterPro:IPR027417InterPro:IPR027640
iPTMnet:Q8GS71KEGG:ath:AT5G47820KO:K10395ncoils:Coil
OMA:GSPSTEMPANTHER:PTHR24115PaxDb:Q8GS71Pfam:PF00225
Pfam:Q8GS71Pfscan:PS50067PhylomeDB:Q8GS71PRIDE:Q8GS71
PRINTS:PR00380PRO:PR:Q8GS71PROSITE:PS00411PROSITE:PS50067
ProteinModelPortal:Q8GS71Proteomes:UP000006548Reactome:R-ATH-983189RefSeq:NP_199593.2
RefSeq:NP_851151.1scanprosite:PS00411SMART:SM00129SMR:Q8GS71
STRING:3702.AT5G47820.1SUPFAM:SSF52540TAIR:AT5G47820tair10-symbols:FRA1
UniGene:At.43765UniProt:Q8GS71
Coordinates (TAIR10) chr5:+:19366505..19372229
Molecular Weight (calculated) 116740.00 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.70
Length 1035 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESTPPPDDC SVKVAVHIRP LIGDERIQGC QDCVTVVTGK PQVQIGSHSF TFDHVYGSSG SPSTEMYEEC AAPLVDGLFQ GYNATVLAYG QTGSGKTYTM
0101: GTGCGDSSQT GIIPQVMNAL FTKIETLKQQ IEFQIHVSFI EIHKEEVQDL LDPCTVNKSD TNNTGHVGKV AHVPGKPPIQ IRETSNGVIT LAGSTEVSVS
0201: TLKEMAACLD QGSVSRATGS TNMNNQSSRS HAIFTITVEQ MRKINTDSPE NGAYNGSLKE EYLCAKLHLV DLAGSERAKR TGSDGLRFKE GVHINKGLLA
0301: LGNVISALGD EKKRKDGAHV PYRDSKLTRL LQDSLGGNSR TVMIACISPA DINAEETLNT LKYANRARNI RNKPVVNRDP VSSEMLKMRQ QVEYLQAELS
0401: LRTGGSSCAE VQALKERIVW LETANEELCR ELHEYRSRCP GVEHSEKDFK DIRADDIVGS VRPDGLKRSL HSIESSNYPM VEATTGDSRE IDEEAKEWEH
0501: KLLQNSMDKE LYELNRRLEE KESEMKLFDG YDPAALKQHF GKKIAEVEDE KRSVQEERNR LLAEIENLAS DGQAQKLQDV HAQNLKALEA QILDLKKKQE
0601: SQVQLLKQKQ KSDDAARRLQ DEIQSIKAQK VQLQHRMKQE AEQFRQWKAS REKELLQLRK EGRKSEYERH KLQALNQRQK MVLQRKTEEA AMATKRLKEL
0701: LEARKSSPRE HSAGTNGFGT NGQTNEKSLQ RWLDHELEVM VNVHEVRHEY EKQSHVRAAL AEELAVLRQV DEFAVKGLSP PRGKNGFARA SSLSPNARMA
0801: RISSLENMLV ISSNSLVAMA SQLSEAEERE RAFTNRGRWN QLRSMGEAKN LLQYMFNSLA ETRCQLWEKD VEIKEMKDQF KEIVGLLRQS ELRRKEAEKE
0901: LKLREQAIAT SLGTPPSSVK HVAEDLSTPS PMTVPAQKQL KFTPGIANGK VRGPAAFLDT NKKMVPMGQV SMRKLSAVGK QGGRLWRWKR SHHQWIVQFK
1001: WKWQKPWRLS EWIRTSDETL LKSKPRLKAL PNKIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)