AT2G20190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CLIP-associated protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CLIP-associated protein (CLASP); FUNCTIONS IN: binding; INVOLVED IN: mitosis, protein stabilization, cell growth; LOCATED IN: spindle microtubule, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8711862..8718813 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 158960.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1439 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEALEMARA KDTKERMAAV ERLHQLLEAS RKSLSPAEVT SLVDSCLDLL KDSNFRVSQG ALQALASAAV LAGEHLKLHL NALVPAVVER LGDSKQPVRD 0101: AARRLLTTLM EVSSPTIIVE RAGSYAWMHK SWRVREEFAR TVTSAIGLFA STELPLQRVI LAPILQMLND PNQAVREAAI LCIEEMYMQG GSQFREELQR 0201: HHLPSYMVKD INARLERIEP QLRSTDGRSA HHVVNEVKAS SVNPKKSSPR AKAPTRENSL FGGDADITEK PIEPIKVYSE KELIREFEKI AATLVPEKDW 0301: SMRISAMRRV EGLVAGGATD YSCFRGLLKQ LVGPLSTQLA DRRSTIVKQA CHLLCLLSKE LLGDFEACAE TFIPVLFKLV VITVLVIAES ADNCIKTMLR 0401: NCKAARVLPR IAESAKHDRN AILRARCCEY ALLTLEHWPD APEIQRSVDL YEDLIRCCVA DAMSEVRATA RMCYRMFAKT WPDRSRRLFS SFDPVIQRLI 0501: NEEDGGIHRR HASPSVRERH SQPSFSQTSA PSNLPGYGTS AIVAMDRSSN LSSGGSLSSG LLLSQSKDVN KGSERSLESV LQSSKQKVSA IESMLRGLHI 0601: SDRQNPAALR SSSLDLGVDP PSSRDPPFHA VAPASNSHTS SAAAESTHSI NKGSNRNGGL GLSDIITQIQ ASKDSGRSSY RGNLLSESHP TFSSLTAKRG 0701: SERNERSSLE ESNDAREVRR FMAGHFDRQQ MDTAYRDLTF RESNASHVPN FQRPLLRKNV GGRMSAGRRR SFDDSQLQIG DISNFVDGPA SLNEALNDGL 0801: NSSSDWCARV AAFNFLQTLL QQGPKGAQEV IQSFEKVMKL FLRHLDDPHH KVAQAALSTL ADLIPSCRKP FESYMERVLP HVFSRLIDPK EVVRQPCSST 0901: LEIVSKTYSV DSLLPALLRS LDEQRSPKAK LAVIEFAINS FNRYAGNPEI SGNSGILKLW LAKLTPLTRD KNTKLKEASI TCIISVYNHY DSAGLLNYIL 1001: SLSVEEQNSL RRALKQYTPR IEVDLLNYMQ SKKEKQRIKS YDPSDAIGTS SEEGYAGASK KNIFLGRYSG GSIDSDSGRK WSSSQEPTMI TGGVGQNVSS 1101: GTQEKLYQNV RTGISSASDL LNPKDSDYTF ASAGQNSISR TSPNGSSENI EILDDLSPPH LEKNGLNLTS VDSLEGRHEN EVSRELDLGH YMLTSIKVNT 1201: TPESGPSIPQ ILHMINGSDG SPSSSKKSGL QQLIEASVAN EESVWTKYFN QILTVVLEVL DDEDFSIKEL ALSLISEMLK SQKDAMEDSV EIVIEKLLHV 1301: SKDTVPKVST EAEQCLTTVL SQYDPFRCLS VIVPLLVTED EKTLVACINC LTKLVGRLSQ EELMDQLSSF LPAVFEAFGS QSADVRKTVV FCLVDIYIML 1401: GKAFLPYLEG LNSTQVRLVT IYANRISQAR NGAPIDADT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)