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AT1G26945.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.
Computational
Description (TAIR10)
KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT3G28857.1); Has 97 Blast hits to 97 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24820eggNOG:ENOG410J1N2eggNOG:ENOG410Z0M7EMBL:AC005508
EMBL:AK119110EMBL:BT004686EMBL:CP002684EnsemblPlants:AT1G26945
EnsemblPlants:AT1G26945.1entrez:839585Gene3D:4.10.280.10GeneID:839585
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0009416GO:GO:0040008Gramene:AT1G26945.1hmmpanther:PTHR12565
hmmpanther:PTHR12565:SF148HOGENOM:HOG000239487InParanoid:Q8GW32IntAct:Q8GW32
InterPro:IPR011598KEGG:ath:AT1G26945ncoils:CoilOMA:QMVALEI
PaxDb:Q8GW32Pfam:PF00010Pfam:Q8GW32Pfscan:PS50888
PhylomeDB:Q8GW32PRIDE:Q8GW32PRO:PR:Q8GW32PROSITE:PS50888
ProteinModelPortal:Q8GW32Proteomes:UP000006548RefSeq:NP_849712.1STRING:3702.AT1G26945.1
SUPFAM:SSF47459TAIR:AT1G26945tair10-symbols:KDRUniGene:At.44742
UniProt:Q8GW32
Coordinates (TAIR10) chr1:+:9351571..9352474
Molecular Weight (calculated) 10718.50 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.77
Length 94 amino acids
Sequence (TAIR10)
(BLAST)
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)