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AT1G09250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 250 Blast hits to 250 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:22687eggNOG:ENOG410J1F4eggNOG:ENOG410YRF4EMBL:AC003114
EMBL:AK227577EMBL:BT003052EMBL:CP002684EnsemblPlants:AT1G09250
EnsemblPlants:AT1G09250.1entrez:837446Gene3D:4.10.280.10GeneID:837446
Genevisible:O80482GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT1G09250.1hmmpanther:PTHR33124hmmpanther:PTHR33124:SF7
HOGENOM:HOG000237706InParanoid:O80482InterPro:IPR011598iPTMnet:O80482
KEGG:ath:AT1G09250ncoils:CoilOMA:KSTGNCKPaxDb:O80482
Pfam:O80482Pfscan:PS50888PhylomeDB:O80482PIR:D86225
PRIDE:O80482PRO:PR:O80482PROSITE:PS50888ProteinModelPortal:O80482
Proteomes:UP000006548RefSeq:NP_563839.1SMR:O80482STRING:3702.AT1G09250.1
SUPFAM:SSF47459TAIR:AT1G09250UniGene:At.43282UniGene:At.73990
UniProt:O80482
Coordinates (TAIR10) chr1:+:2989509..2990132
Molecular Weight (calculated) 23154.10 Da
IEP (calculated) 11.38
GRAVY (calculated) -0.62
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MVESLFPSIE NTGESSRRKK PRISETAEAE IEARRVNEES LKRWKTNRVQ QIYACKLVEA LRRVRQRSST TSNNETDKLV SGAAREIRDT ADRVLAASAR
101: GTTRWSRAIL ASRVRAKLKK HRKAKKSTGN CKSRKGLTET NRIKLPAVER KLKILGRLVP GCRKVSVPNL LDEATDYIAA LEMQVRAMEA LAELLTAAAP
201: RTTLTGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)