suba logo
AT4G30410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57780.1); Has 151 Blast hits to 151 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J028eggNOG:ENOG410YUFSEMBL:AJ576046EMBL:AK227688
EMBL:AL161577EMBL:BT006398EMBL:CP002687EnsemblPlants:AT4G30410
EnsemblPlants:AT4G30410.1EnsemblPlants:AT4G30410.2entrez:829164GeneID:829164
GO:GO:0003700GO:GO:0006355Gramene:AT4G30410.1Gramene:AT4G30410.2
hmmpanther:PTHR33124hmmpanther:PTHR33124:SF5HOGENOM:HOG000238834InterPro:IPR011598
KEGG:ath:AT4G30410OMA:VCHRKIVPIR:F85355Proteomes:UP000006548
RefSeq:NP_194770.1RefSeq:NP_974640.1STRING:3702.AT4G30410.1SUPFAM:SSF47459
TAIR:AT4G30410UniGene:At.31836UniGene:At.67756UniProt:Q9M0B9
Coordinates (TAIR10) chr4:-:14871309..14871851
Molecular Weight (calculated) 20436.20 Da
IEP (calculated) 11.03
GRAVY (calculated) -0.45
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPTSSMNEE FLKKWQMGLQ IFRPSIDNTS VHERKKAIKL SADVAMASLR KGTTCWSRAL IEKTATEDNF LVRQMLSGIK AETLINKKLP KKTVCHRKIV
101: RRSKKILRRK SKSASEEAAA KAKRLVKRRT QGLRNVVPGG ELMSNDVLLL QETLDYIVSL QTQVNVMRSI VDAAEAEIER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)