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AT3G28857.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.614
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT5G39860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J08HeggNOG:ENOG410ZNWTEMBL:AP000386EMBL:AY088680
EMBL:BT024640EMBL:CP002686EnsemblPlants:AT3G28857EnsemblPlants:AT3G28857.1
entrez:2745895Gene3D:4.10.280.10GeneID:2745895GO:GO:0006351
GO:GO:0006355GO:GO:0009740GO:GO:0040008Gramene:AT3G28857.1
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF172HOGENOM:HOG000239487InParanoid:Q9LJX1
InterPro:IPR011598KEGG:ath:AT3G28857ncoils:CoilOMA:HEASVIR
PaxDb:Q9LJX1Pfam:PF00010Pfam:Q9LJX1Pfscan:PS50888
PhylomeDB:Q9LJX1PRO:PR:Q9LJX1PROSITE:PS50888ProteinModelPortal:Q9LJX1
Proteomes:UP000006548RefSeq:NP_974372.1STRING:3702.AT3G28857.1SUPFAM:SSF47459
TAIR:AT3G28857UniGene:At.47880UniGene:At.68125UniProt:Q9LJX1
Coordinates (TAIR10) chr3:-:10855781..10856313
Molecular Weight (calculated) 10699.70 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.75
Length 92 amino acids
Sequence (TAIR10)
(BLAST)
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)