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AT2G42830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).
Computational
Description (TAIR10)
SHATTERPROOF 2 (SHP2); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1); Has 7190 Blast hits to 7188 proteins in 915 species: Archae - 0; Bacteria - 3; Metazoa - 641; Fungi - 306; Plants - 6161; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AY727646EMBL:AY727647
EMBL:AY727648EMBL:AY727649EMBL:AY727650EMBL:AY727651
EMBL:AY727652EMBL:AY727653EMBL:AY727654EMBL:AY727655
EMBL:AY727656EMBL:AY727657EMBL:AY727658EMBL:AY727659
EMBL:AY727661EMBL:AY727662EMBL:AY727663EMBL:AY727664
EMBL:AY727665EMBL:AY727666EMBL:AY727667EMBL:AY727668
EMBL:JQ973092EnsemblPlants:AT2G42830EnsemblPlants:AT2G42830.1entrez:818883
ExpressionAtlas:Q5XXG9GeneID:818883GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT2G42830.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF150InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT2G42830
KO:K09264ncoils:CoilPfam:P29385Pfam:PF00319
Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PhylomeDB:P29385
PhylomeDB:Q5XXG9PRINTS:PR00404PROSITE:PS00350PROSITE:PS50066
PROSITE:PS51297RefSeq:NP_565986.1scanprosite:PS00350SMART:SM00432
SMR:Q5XXG9STRING:3702.AT2G42830.2SUPFAM:SSF55455TAIR:AT2G42830
tair10-symbols:AGL5tair10-symbols:SHP2UniGene:At.284UniProt:P29385
UniProt:Q5XXG9
Coordinates (TAIR10) chr2:+:17820602..17823806
Molecular Weight (calculated) 28158.40 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.80
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)