AT5G27130.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : AGAMOUS-like 39 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like 39 (AGL39); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G48150.1); Has 663 Blast hits to 663 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 44; Plants - 617; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:9546633..9547553 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34354.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.22 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSSDSTMMK KGTKRKIEIK KRETKEQRAV TCSKRRQTVF SKAADLCLIS GANIAVFVTS PSDSSDVVYS FSGYSSAYEI ADCYLNRKPP PKIVNPAGSK 101: LGFWWEDPDL YHSCDDLSEL SIIEDRLQRM KKHVMACLEK EEKSQLVSSF DQNPNSTCSL DVEDCDGSSY SQIASTFTPN SVNEYCSDQT FSSFHGDQNP 201: NLSSPSFDQD CYSSLYQICG ESSSQVASFD QNPSSEIQGF ETEEEINQIN LLLQETQTEA NVNLDDEICF WNDLSNDDVF GLNSYFGLDN TNAMINFGDS 301: DFRRHV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)