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AT5G27130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 39
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 39 (AGL39); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G48150.1); Has 663 Blast hits to 663 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 44; Plants - 617; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:CP002688EnsemblPlants:AT5G27130
EnsemblPlants:AT5G27130.1entrez:832771GeneID:832771GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G27130.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF204InParanoid:F4K2U3InterPro:IPR002100
KEGG:ath:AT5G27130PaxDb:F4K2U3Pfam:PF00319Pfscan:PS50066
PRIDE:F4K2U3PROSITE:PS50066ProteinModelPortal:F4K2U3Proteomes:UP000006548
RefSeq:NP_198065.2SMART:SM00432SMR:F4K2U3STRING:3702.AT5G27130.1
SUPFAM:SSF55455TAIR:AT5G27130tair10-symbols:AGL39UniGene:At.30824
UniProt:F4K2U3
Coordinates (TAIR10) chr5:+:9546633..9547553
Molecular Weight (calculated) 34354.40 Da
IEP (calculated) 4.22
GRAVY (calculated) -0.61
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSSDSTMMK KGTKRKIEIK KRETKEQRAV TCSKRRQTVF SKAADLCLIS GANIAVFVTS PSDSSDVVYS FSGYSSAYEI ADCYLNRKPP PKIVNPAGSK
101: LGFWWEDPDL YHSCDDLSEL SIIEDRLQRM KKHVMACLEK EEKSQLVSSF DQNPNSTCSL DVEDCDGSSY SQIASTFTPN SVNEYCSDQT FSSFHGDQNP
201: NLSSPSFDQD CYSSLYQICG ESSSQVASFD QNPSSEIQGF ETEEEINQIN LLLQETQTEA NVNLDDEICF WNDLSNDDVF GLNSYFGLDN TNAMINFGDS
301: DFRRHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)