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AT4G11250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 52
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 52 (AGL52); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 78 (TAIR:AT5G65330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AL096882EMBL:AL161531
EMBL:AY141216EMBL:CP002687EnsemblPlants:AT4G11250EnsemblPlants:AT4G11250.1
entrez:826727GeneID:826727GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT4G11250.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF240HOGENOM:HOG000064579IntAct:Q9SUT6InterPro:IPR002100
KEGG:ath:AT4G11250ncoils:CoilPfam:PF00319Pfscan:PS50066
PhylomeDB:Q9SUT6PIR:T13016PROSITE:PS50066Proteomes:UP000006548
RefSeq:NP_192864.1SMART:SM00432STRING:3702.AT4G11250.1SUPFAM:SSF55455
TAIR:AT4G11250tair10-symbols:AGL52UniGene:At.70331UniProt:Q9SUT6
Coordinates (TAIR10) chr4:+:6849578..6850567
Molecular Weight (calculated) 37836.50 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.81
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQASSSSSC NPTSLTNRLK TIFKKAEELS ILCAIDVCVI YYGPDGDLRT WPKDRETVKN MALRYKEDRK RKKCLNLHEF LEKEKVKDKD KYKGKTNYVK
101: NPNWYPNFDH YSPQQLSQLI QSLERTLSTL QKRLRIVESQ KKQNTNLVHQ SLTPSYLNQT QHLDPSKFSL YMYNHGDATL SQLPLSASQS NQLINYQMQH
201: GFGQNMCLDN ITNNNNFQHP GVSNTQDYSP LLSANNYGLN NHLMQQQDQL HGFDQNLCMM SEIINNNNGL QHPNLSNTVP HEFPYGNTSF SQDMFSSYDG
301: SSLLQTSSLP PLHNIPNSYC FSDNSRLLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)