suba logo
AT1G60920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 55
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 55 (AGL55); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like-56 (TAIR:AT1G60880.1); Has 1122 Blast hits to 1122 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 175; Plants - 917; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC018908EMBL:CP002684
EnsemblPlants:AT1G60920EnsemblPlants:AT1G60920.1entrez:842383GeneID:842383
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT1G60920.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF233HOGENOM:HOG000152226
IntAct:Q9C960InterPro:IPR002100KEGG:ath:AT1G60920ncoils:Coil
OMA:WWEDQAFPfam:PF00319Pfscan:PS50066PhylomeDB:Q9C960
PIR:F96634PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548
RefSeq:NP_176288.1SMART:SM00432STRING:3702.AT1G60920.1SUPFAM:SSF55455
TAIR:AT1G60920tair10-symbols:AGL55UniGene:At.64874UniProt:Q9C960
Coordinates (TAIR10) chr1:-:22429692..22430267
Molecular Weight (calculated) 21502.20 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.55
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)