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AT1G46408.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 97
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 97 (AGL97); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 99 (TAIR:AT5G04640.1); Has 4542 Blast hits to 4538 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 472; Fungi - 90; Plants - 3932; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
BioGrid:26337eggNOG:COG5068eggNOG:KOG0014EMBL:AB493500
EMBL:AC083835EMBL:CP002684EnsemblPlants:AT1G46408EnsemblPlants:AT1G46408.1
entrez:841112GeneID:841112GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT1G46408.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF233HOGENOM:HOG000033848InParanoid:Q9C633IntAct:Q9C633
InterPro:IPR002100KEGG:ath:AT1G46408ncoils:CoilOMA:DECNEDF
PaxDb:Q9C633Pfam:PF00319Pfam:Q9C633Pfscan:PS50066
PhylomeDB:Q9C633PIR:E96511PRINTS:PR00404PRO:PR:Q9C633
PROSITE:PS50066ProteinModelPortal:Q9C633Proteomes:UP000006548RefSeq:NP_175144.1
SMART:SM00432SMR:Q9C633STRING:3702.AT1G46408.1SUPFAM:SSF55455
TAIR:AT1G46408tair10-symbols:AGL97UniGene:At.65984UniProt:Q9C633
Coordinates (TAIR10) chr1:-:17232135..17232935
Molecular Weight (calculated) 29854.40 Da
IEP (calculated) 3.96
GRAVY (calculated) -0.53
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGVKRKIAI EKIQNKNPRA VSFSKRRKGL YSKASELCLL SDAEIAIIAT PVSSNSNAAF YSFGHSSVDN VVAAFLANQR PCDERFWWED ESLLKSENLE
101: ELREAMDSMS TMLRDLKELE KQRDHQTQTL IHQPCSARVC IQDYVTVNFD GFNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIFDT VTNSEFLSVN
201: LEMDDVTVNS EGNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIIEY LTSSEALSMN LKMDDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)