suba logo
AT2G03710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.
Computational
Description (TAIR10)
SEPALLATA 4 (SEP4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7361 Blast hits to 7360 proteins in 917 species: Archae - 0; Bacteria - 4; Metazoa - 643; Fungi - 310; Plants - 6307; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
BioGrid:299DIP:DIP-33748NeggNOG:COG5068eggNOG:KOG0014
EMBL:AC006836EMBL:AY063894EMBL:AY096386EMBL:AY141229
EMBL:CP002685EMBL:U81369EnsemblPlants:AT2G03710EnsemblPlants:AT2G03710.1
entrez:814898GeneID:814898Genevisible:P29383GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0010076
GO:GO:0048440GO:GO:0048441GO:GO:0048442GO:GO:0048443
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF194HOGENOM:HOG000155301InParanoid:P29383
IntAct:P29383InterPro:IPR002100InterPro:IPR002487iPTMnet:P29383
KEGG:ath:AT2G03710ncoils:CoilOMA:IQEAGFFPaxDb:P29383
Pfam:P29383Pfam:PF00319Pfam:PF01486Pfscan:PS50066
Pfscan:PS51297PhylomeDB:P29383PIR:S57793PRIDE:P29383
PRINTS:PR00404PRO:PR:P29383PROSITE:PS00350PROSITE:PS50066
PROSITE:PS51297ProteinModelPortal:P29383Proteomes:UP000006548RefSeq:NP_178466.1
RefSeq:NP_849930.1RefSeq:NP_973411.1scanprosite:PS00350SMART:SM00432
SMR:P29383STRING:3702.AT2G03710.1SUPFAM:SSF55455TAIR:AT2G03710
tair10-symbols:AGL3tair10-symbols:SEP4UniGene:At.10200UniProt:P29383
Coordinates (TAIR10) chr2:+:1129622..1131628
Molecular Weight (calculated) 29575.00 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.82
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)