AT1G31630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 86 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AGAMOUS-like 86 (AGL86); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 92 (TAIR:AT1G31640.1); Has 3824 Blast hits to 3528 proteins in 436 species: Archae - 0; Bacteria - 41; Metazoa - 519; Fungi - 70; Plants - 2941; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11318528..11319547 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36943.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 339 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSKIKLSLI ANKTSRRTTF RKRKGGITNK LHELTTLCGV KACAVISSPY ENPVVWPSTE GVQEAVSMFM ERPATEQSKL MMSHETYLQD KITKETKKLE 101: SLRRENRESQ LRQFMFDCVE GKMSEHQYGA RDLQDLSLYI DHYINQLNSS VMLLTNNGAS SSSFPPPLHT SVAGAGAGAG AAPLVVAGAG AAPLAVAGAG 201: ASPLAVAGVG AAPLAVAGAG PPMAQNQYEP IQPYIPTAFS DNIQYQAPVD FNHQIQHGIY DNLSLDPNHQ YPFQDDPFME MLMEYPYEQV GYAAEHAHIP 301: FMNGNYYNYH QPPTVGLTTT GHMPSNNATT TTTTNTTVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)