AT1G65360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 23 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like 23 (AGL23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chloroplast organization, embryo sac development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 28 (TAIR:AT1G01530.1); Has 5721 Blast hits to 5721 proteins in 690 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 299; Plants - 4728; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24281337..24282151 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25338.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 226 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK 101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF 201: DQNGMTTNPT QTLLFGFDIM NRTPGV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)