AT1G31640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 92 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AGAMOUS-like 92 (AGL92); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 86 (TAIR:AT1G31630.1); Has 2313 Blast hits to 2290 proteins in 309 species: Archae - 0; Bacteria - 3; Metazoa - 438; Fungi - 19; Plants - 1702; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11322692..11324176 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52214.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 464 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTKTKLVLI PDRHFRRATF RKRNAGIRKK LHELTTLCDI KACAVIYSPF ENPTVWPSTE GVQEVISEFM EKPATERSKT MMSHETFLRD QITKEQNKLE 101: SLRRENRETQ LKHFMFDCVG GKMSEQQYGA RDLQDLSLFT DQYLNQLNAR KKFLTEYGES SSSVPPLFDV AGANPPVVAD QAAVTVPPLF AVAGANLPVV 201: ADQAAVTVPP LFAVAGANLP VVADQAAVNV PTGFHNMNVN QNQYEPVQPY VPTGFSDHIQ YQNMNFNQNQ QEPVHYQALA VAGAGLPMTQ NQYEPVHYQS 301: LAVAGGGLPM SQLQYEPVQP YIPTVFSDNV QYQHMNLYQN QQEPVHYQAL GVAGAGLPMN QNQYEPVQPY VPTGFSDHFQ FENMNLNQNQ QEPVQYQAPV 401: DFNHQIQQGN YDMNLNQNMK HAHIPFMDGN YYNYHQPPTV GLTSTGHMPS TTTTTTNNNN NNNV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)