AT5G27960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : AGAMOUS-like 90 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
AGAMOUS-like 90 (AGL90); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 36 (TAIR:AT5G26650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:9991685..9992770 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 36731.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.54 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 320 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKKVKLSLIA NERSRKTSFM KRKNGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE GAKKVASKFL EMPRTARTRK MMDQETHLME RITKAKEQLK 101: NLAAENRELQ VRRFMFDCVE GKMSQYRYDA KDLQDLLSCM NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE SFSDSPIHST TRVVDTPNAT 201: NPHVLAGDMT PFLDADANAN MNQVQYQAPN NLFNQIQREF YNINLNLNLN LNSNQYLNQQ QSFMNPMVEQ HMNHVGGRES IPFVDRNYYN YNQLPAVDLA 301: STSYMPSTTD VYDPYINNNL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)