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AT5G27960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 90
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 90 (AGL90); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 36 (TAIR:AT5G26650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:18139eggNOG:COG5068eggNOG:KOG0014EMBL:AC007627
EMBL:AY141249EMBL:CP002688EnsemblPlants:AT5G27960EnsemblPlants:AT5G27960.1
entrez:832865GeneID:832865Genevisible:Q7XJK5GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G27960.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF153HOGENOM:HOG000006067InParanoid:Q7XJK5
IntAct:Q7XJK5InterPro:IPR002100KEGG:ath:AT5G27960ncoils:Coil
OMA:NGSSQGMPaxDb:Q7XJK5Pfam:PF00319Pfam:Q7XJK5
Pfscan:PS50066PhylomeDB:Q7XJK5PRINTS:PR00404PRO:PR:Q7XJK5
PROSITE:PS50066ProteinModelPortal:Q7XJK5Proteomes:UP000006548RefSeq:NP_198148.2
SMART:SM00432SMR:Q7XJK5STRING:3702.AT5G27960.1SUPFAM:SSF55455
TAIR:AT5G27960tair10-symbols:AGL90UniGene:At.30775UniProt:Q7XJK5
Coordinates (TAIR10) chr5:-:9991685..9992770
Molecular Weight (calculated) 36731.70 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.60
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKVKLSLIA NERSRKTSFM KRKNGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE GAKKVASKFL EMPRTARTRK MMDQETHLME RITKAKEQLK
101: NLAAENRELQ VRRFMFDCVE GKMSQYRYDA KDLQDLLSCM NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE SFSDSPIHST TRVVDTPNAT
201: NPHVLAGDMT PFLDADANAN MNQVQYQAPN NLFNQIQREF YNINLNLNLN LNSNQYLNQQ QSFMNPMVEQ HMNHVGGRES IPFVDRNYYN YNQLPAVDLA
301: STSYMPSTTD VYDPYINNNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)