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AT2G45650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 6
Curator
Summary (TAIR10)
sequence suggests this encodes a MADS-box transcription factor
Computational
Description (TAIR10)
AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:DQ446624EMBL:JX121859
EMBL:JX121860EMBL:JX121866EMBL:JX121867EMBL:JX121869
EMBL:JX121870EMBL:JX121871EMBL:JX121873EMBL:JX121878
EMBL:JX121880EMBL:JX121883EMBL:JX121884EMBL:JX121885
EMBL:JX121886EMBL:JX121887EMBL:JX121888EMBL:JX121889
EMBL:JX121890EMBL:JX121893EMBL:JX121894EMBL:JX121895
EMBL:JX121897EMBL:JX121898EMBL:JX121899EMBL:JX121900
EMBL:JX121901EMBL:JX121902EMBL:JX121903EMBL:JX121904
EMBL:JX121908EMBL:JX121909EMBL:JX121910EMBL:JX121912
EMBL:JX121913EMBL:JX121914EMBL:JX121915EMBL:JX121917
EMBL:JX121920EMBL:JX121921EMBL:JX121922EMBL:JX121923
EMBL:JX121924EMBL:JX121925EMBL:JX121926EMBL:JX121928
EMBL:JX121930EMBL:JX121933EMBL:JX121935EMBL:JX121936
EMBL:JX121937EMBL:JX121938EMBL:JX121939EMBL:JX121940
EMBL:JX121941EMBL:JX121943EMBL:JX121945EMBL:JX121946
EMBL:JX121947EMBL:JX121948EMBL:JX121949EMBL:JX121950
EMBL:JX121952EMBL:JX121957EMBL:JX121958EMBL:JX121959
EMBL:JX121960EMBL:JX121961EMBL:JX121963EMBL:JX121965
EnsemblPlants:AT2G45650EnsemblPlants:AT2G45650.1entrez:819173GeneID:819173
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT2G45650.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF146InterPro:IPR002100
InterPro:IPR002487KEGG:ath:AT2G45650KO:K09264ncoils:Coil
OMA:ESTIERYPfam:P29386Pfam:PF00319Pfam:PF01486
Pfscan:PS50066Pfscan:PS51297PRINTS:PR00404PROSITE:PS00350
PROSITE:PS50066PROSITE:PS51297RefSeq:NP_182089.1scanprosite:PS00350
SMART:SM00432STRING:3702.AT2G45650.1SUPFAM:SSF55455TAIR:AT2G45650
tair10-symbols:AGL6UniGene:At.512UniProt:P29386UniProt:Q1PEU3
Coordinates (TAIR10) chr2:+:18804453..18806291
Molecular Weight (calculated) 28746.10 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.65
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)