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AT1G24260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.
Computational
Description (TAIR10)
SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7422 Blast hits to 7421 proteins in 918 species: Archae - 0; Bacteria - 2; Metazoa - 630; Fungi - 302; Plants - 6411; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AK221861EnsemblPlants:AT1G24260
EnsemblPlants:AT1G24260.1entrez:839040ExpressionAtlas:Q56X18GO:GO:0003700
GO:GO:0005634hmmpanther:PTHR11945hmmpanther:PTHR11945:SF196HOGENOM:HOG000155301
InterPro:IPR002487ncoils:CoilPaxDb:Q56X18Pfam:PF00319
Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PRIDE:Q56X18
PROSITE:PS51297scanprosite:PS00350STRING:3702.AT1G24260.2tair10-symbols:AGL9
tair10-symbols:SEP3UniProt:Q56X18
Coordinates (TAIR10) chr1:-:8593790..8595862
Molecular Weight (calculated) 28968.60 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.77
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)