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AT4G09960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
a MADS box transcription factor expressed in the carpel and ovules
Computational
Description (TAIR10)
SEEDSTICK (STK); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.1); Has 7129 Blast hits to 7128 proteins in 907 species: Archae - 0; Bacteria - 6; Metazoa - 637; Fungi - 309; Plants - 6073; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Protein Annotations
BioGrid:11885eggNOG:COG5068eggNOG:KOG0014EMBL:AL049481
EMBL:AL161516EMBL:AY065289EMBL:AY087201EMBL:AY133738
EMBL:CP002687EMBL:U20182EnsemblPlants:AT4G09960EnsemblPlants:AT4G09960.1
entrez:826586ExpressionAtlas:Q38836GeneID:826586Genevisible:Q38836
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF170HOGENOM:HOG000155301InParanoid:Q38836
IntAct:Q38836InterPro:IPR002100InterPro:IPR002487ncoils:Coil
PaxDb:Q38836Pfam:PF00319Pfam:PF01486Pfam:Q38836
Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q38836PIR:T04000
PRIDE:Q38836PRINTS:PR00404PRO:PR:Q38836PROSITE:PS00350
PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:Q38836Proteomes:UP000006548
RefSeq:NP_192734.1RefSeq:NP_849351.1scanprosite:PS00350SMART:SM00432
SMR:Q38836STRING:3702.AT4G09960.3SUPFAM:SSF55455TAIR:AT4G09960
tair10-symbols:AGL11tair10-symbols:STKUniGene:At.2918UniProt:Q38836
Coordinates (TAIR10) chr4:-:6236713..6239409
Molecular Weight (calculated) 26185.10 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.69
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)