AT4G33600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.896 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33590.1); Has 131 Blast hits to 131 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 12; Fungi - 24; Plants - 58; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16144452..16145864 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54627.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKRSVSRNL VTCLASPKFS LNVLCLVVTV FVLLQIWSFH ITQQPILLPP SLFTYLKEQQ QEPEQIKSEN ETAYLVEKLR ESVTFLPLKD LRFSNKPLEG 101: HTWFMSSLYD NQTKGEVQYQ EFPSESSKGR LLCLKGVDEH DGSWNYYALA WPQALPVNAS LQEGLTFVSY NHYDYGNMWH GLSAMVPFVA WSLRHQCENP 201: QRWVLYHWGE LRFKMGNWLN EIITATYGQN TEFLRFRDKN RPVCFEKAVV MRHNEGGMSR ERRMEVFDLI RCKARHYCNI SLSETSKSRI GMTLLMRTGP 301: RSFKNESAVI DIFKRECKNV EGCELKVSYS NNLTFCEQVE LMRMTDVLVS PHGAQLTNLV LMDRNSSVME FLPKGWRKLA GVGQLVYQWG TRWSGMRHEG 401: SWHDPDGEIC QFPDTDRRCM SSVYKNGRIG YNETYFGEWA KSVLGKFKER KMANVVGRKH SYGSLDGCWC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)