AT3G58740.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 1.000 ASURE: peroxisome What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : citrate synthase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
citrate synthase 1 (CSY1); FUNCTIONS IN: citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: fruit; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase active site (InterPro:IPR019810), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13123 Blast hits to 13123 proteins in 3164 species: Archae - 173; Bacteria - 8422; Metazoa - 267; Fungi - 318; Plants - 178; Viruses - 0; Other Eukaryotes - 3765 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:21721066..21723726 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52898.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 480 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEISERARAR LAVLNAHLTV SEPNQVLPAI EPWCTSAHIT AAPHGSLKGN LKIVDERTGN EYQVPVSEHG TVKTVDLKKI TTGKDDKGLN LYDPGYLNTA 101: PVRSSISYID GDEGILRYRG YPVEELAEKS TYTEVTYLLI YGNLPSQRQL ADWEFAISQN SAVPQGVLDM IQSMPNDVHP VGALVTAMSA LSIFYPDANP 201: SLMGLGVYKS KQVRDKQIVR VLGQAPTIAA AAYLRKAGKP PVQPLSNLSY SENFLYMVES MGDRSYKPNP RLARVLDILF ILQAEHEMNC STAAARHLSS 301: SGGDVYTAVS GGVGAIYGPL HGGAVEATIN MLSEIGTVEN IPEFIESVKN KKRRLSGFGH RIYKNYDPRG KVVKKLADEV FSILGRDPLV EVGDALEKAA 401: LSDEYFVKRK LYPNVDFYSG LINRAMGIPS SFTAVSRIAG YLSHWRESLD DPDTKIMRPQ QVYTGAGIRH YETVRERTKL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)