AT5G07260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : START (StAR-related lipid-transfer) lipid-binding domain | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
START (StAR-related lipid-transfer) lipid-binding domain; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT4G26920.1); Has 440 Blast hits to 414 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2278058..2280091 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 61692.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.20 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYHHLQTRIF LHQQNDLLRA ENRARIHAMT SPSICRSCEE PIISTEEREL WLENARLRSE IDTLTCFIWR LNSFRNLYPA FATSLTEVGY GVAVMTSLSL 101: KEVVFLARQR TPMWTSNGRL NLDEYYSKLF PWYARNAPGF VHEVSRASAF VPCDASSLVA NLMNHVSWQK IFPSIIADVS VESQQRGLQK INVNFMPQIS 201: PLIQTRNVKL LRRSRHIEDD TWAIAEISMY FSSYAQHLRP EYMRFPSGYL IQHIANGISK VTILDHWVYK EEEGMNTFNS NSEFGAQRWL TALQKHYYNT 301: CPVSIPSIGH NIQIFDQICR KNLLNLSSFM VNVFCSGVCG ITGQRWNRLN TVGVSANNIR MFTQESRGMS GIPCVLVSAT GLARMHTKPE VMFGLINGAE 401: KQEIWSYLES AKDMKELIRI GRHPNSWNEV SVFSIEWKGS KEWYLIQETY YDESGAMIIH TCVEAPYFAA AINGGDLSGV ELLPSGFTII PCESQECFVT 501: ASCYVKADQT MVTSPNELGS YMENMVTNIL GNVQNALPVH R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)