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AT5G50750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : reversibly glycosylated polypeptide 4
Curator
Summary (TAIR10)
reversibly glycosylated polypeptide RGP-4 (RGP4)
Computational
Description (TAIR10)
reversibly glycosylated polypeptide 4 (RGP4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: cellulose biosynthetic process, cellular cell wall organization; LOCATED IN: cell junction, Golgi apparatus, plant-type cell wall; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G50750-MONOMERCAZy:GT75DNASU:835147EC:5.4.99.30
eggNOG:ENOG410JX3FeggNOG:ENOG4111JA5EMBL:AB023037EMBL:AF329280
EMBL:BT004025EMBL:BT005194EMBL:CP002688EnsemblPlants:AT5G50750
EnsemblPlants:AT5G50750.1entrez:835147ExpressionAtlas:Q9LUE6GeneID:835147
Genevisible:Q9LUE6GO:GO:0005794GO:GO:0005829GO:GO:0009832
GO:GO:0016866GO:GO:0030244GO:GO:0033356GO:GO:0071555
Gramene:AT5G50750.1hmmpanther:PTHR31682HOGENOM:HOG000234443InParanoid:Q9LUE6
InterPro:IPR004901InterPro:IPR029044KEGG:ath:AT5G50750KO:K13379
OMA:MAGYNLEPaxDb:Q9LUE6Pfam:PF03214Pfam:Q9LUE6
PhylomeDB:Q9LUE6PIRSF:PIRSF016429PRIDE:Q9LUE6PRO:PR:Q9LUE6
Proteomes:UP000006548RefSeq:NP_199888.1STRING:3702.AT5G50750.1SUPFAM:SSF53448
TAIR:AT5G50750tair10-symbols:RGP4UniGene:At.7901UniProt:Q9LUE6
UniProt:W8QN51
Coordinates (TAIR10) chr5:+:20641066..20642470
Molecular Weight (calculated) 41868.30 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.42
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGYNLEAIE AAPLKDDLDI VIPTIRSLDF LEQWRPFLHH YHLIIVQDGD PSIKIRVPEG YDYELYNRND INRILGPRAN CISYKDGGCR CFGFMVSKKK
101: YIYTIDDDCF VAKDPSGKDI NVIAQHIKNL ETPSTPHYFN TLYDPFRDGT DFVRGYPFSL REGVQTAISH GLWLNIPDYD APTQLVKPRE RNTRYVDAVM
201: TIPKRVLYPM CGMNLAFNRE LVGPAMYFGL MGEGQPISRY DDMWAGWAAK VVCDHLGFGV KTGLPYLWHS KASNPFVNLK KEHKGLHWQE DMVPFFQNLR
301: LSKESDTAAK CYMEISNMTK EKLTKVDPYF EKLADAMVVW IEAWEELNPP VKKKQSDGKD VKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)