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AT5G50770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.652
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxysteroid dehydrogenase 6
Curator
Summary (TAIR10)
Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.
Computational
Description (TAIR10)
hydroxysteroid dehydrogenase 6 (HSD6); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 1 (TAIR:AT5G50600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:1.1.1.-eggNOG:COG1028eggNOG:KOG1205EMBL:AB023037
EMBL:BT020525EMBL:CP002688EnsemblPlants:AT5G50770EnsemblPlants:AT5G50770.1
entrez:835149Gene3D:3.40.50.720GeneID:835149Genevisible:Q9LUE4
GO:GO:0006694GO:GO:0016021GO:GO:0016491Gramene:AT5G50770.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF419InParanoid:Q9LUE4InterPro:IPR002347
InterPro:IPR016040InterPro:IPR020904KEGG:ath:AT5G50770OMA:MPAMVTT
PANTHER:PTHR24322PaxDb:Q9LUE4Pfam:PF00106Pfam:Q9LUE4
PhylomeDB:Q9LUE4PRIDE:Q9LUE4PRINTS:PR00080PRINTS:PR00081
PRO:PR:Q9LUE4PROSITE:PS00061ProteinModelPortal:Q9LUE4Proteomes:UP000006548
Reactome:R-ATH-194002RefSeq:NP_199890.1scanprosite:PS00061SMR:Q9LUE4
STRING:3702.AT5G50770.1SUPFAM:SSF51735TAIR:AT5G50770tair10-symbols:AtHSD6
tair10-symbols:HSD6TMHMM:TMhelixUniGene:At.29714UniProt:Q9LUE4
Coordinates (TAIR10) chr5:-:20646790..20648696
Molecular Weight (calculated) 37995.50 Da
IEP (calculated) 7.92
GRAVY (calculated) 0.36
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSINKIINF LFPLLTLYAL LVFYPTYQRL KSAVSICRNL FSENVAGKVV VITGAASGIG EALAYEYGKR GAYLALVDIR GEPLFHVAAL AELYGSPEVL
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)