AT1G80090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.673 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cystathionine beta-synthase (CBS) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G15330.1); Has 517 Blast hits to 517 proteins in 144 species: Archae - 0; Bacteria - 47; Metazoa - 83; Fungi - 146; Plants - 195; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30130104..30131855 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43787.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTYMNNEVTT KASKQRLEVH KPRPIFFETL TITQIQIFMQ SYSRLMQFKV KDLMIDKRRL VEVPDNATLG DALNTMTILG IKPVANRVRA VPVAAKPGQW 101: LGAGGSMIVE LDKQSGSARK QYIGMVTMLD VVAHIAGDDG ESGLDKKMAA PVSSIIGHCP EGLSLWSLNP NTSIMDCMEM LSKGIHRVLV PLDSNTENIT 201: GPELVESASA YAMLSQMDLI SFFFDQSSQL HGILSHTVTD LSAIHNTVLA LTSQARVKDA IQCMSIAMLN AVPIVEASGE GEDHKQLVDG KNRRVVGTFS 301: ASDLKGCHLA TLRSWLPLNA LEFVEKIPRT LLFTAATSTP GRELVTCHVT STLAQVIHMV TTKRVHRVWV VDQNGGLQGL VSLTDIIAVV RSALLSGAPD 401: LF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)