suba logo
AT3G12203.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 17 (scpl17); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 16 (TAIR:AT3G12220.1); Has 3617 Blast hits to 3541 proteins in 365 species: Archae - 0; Bacteria - 182; Metazoa - 630; Fungi - 840; Plants - 1564; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12203-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC069472EMBL:AP002047EMBL:BT012565EMBL:CP002686
EnsemblPlants:AT3G12203EnsemblPlants:AT3G12203.1entrez:820399ESTHER:arath-SCP17
Gene3D:3.40.50.1820GeneID:820399Genevisible:Q9C7D6GO:GO:0004180
GO:GO:0005576GO:GO:0016747GO:GO:0019748Gramene:AT3G12203.1
hmmpanther:PTHR11802hmmpanther:PTHR11802:SF29HOGENOM:HOG000198297InParanoid:Q9C7D6
InterPro:IPR001563InterPro:IPR029058KEGG:ath:AT3G12203KO:K16296
MEROPS:S10.A19OMA:SEYWANEPANTHER:PTHR11802PaxDb:Q9C7D6
Pfam:PF00450Pfam:Q9C7D6PhylomeDB:Q9C7D6PRIDE:Q9C7D6
PRINTS:PR00724PRO:PR:Q9C7D6ProteinModelPortal:Q9C7D6Proteomes:UP000006548
RefSeq:NP_187828.1SMR:Q9C7D6STRING:3702.AT3G12203.1SUPFAM:SSF53474
TAIR:AT3G12203tair10-symbols:scpl17TMHMM:TMhelixUniGene:At.39627
UniProt:Q9C7D6
Coordinates (TAIR10) chr3:-:3891357..3893956
Molecular Weight (calculated) 49507.20 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.21
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKECYYLSW ILKFHLLLVL IQLVDSGSTI RFLPGFQGPL PFELETGYIG VGEAEKDQMF YYFIKSESNP EKDPLLLWLS GGPFCSSFTA LIYENGPIAF
101: KAEEYNGSIP SLVSTTYAWT KVASILYLDQ PVGTGFSYSR NPLADIPSDT GVAKPVNEFL HKWLDKHPEF LSNPLYVAGN SYSGIVIPTI VQEISNGNHL
201: DSKPQINLQG FVLGNPATDT DIDLNSRIPF AHGKALISDE HYESLKRSCQ GNYISVNPRN TKCLKLLEDF KKCVSGISEE YILKPDCMWL YSCMANLHSL
301: SEYWANEKSV RKALLVNEGT VRKWIRCNTE IAYNKDIRSS VPYHKYISIE GYRSLVFSGD HDMLVPFLGT QAWIRSLNYS IVDDWRPWMV QNQVAGYTRT
401: YANKMTFATV KGGGHTSEYK PVETYIMIKR WLSGQPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)