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AT1G78500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.826
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Terpenoid cyclases family protein
Curator
Summary (TAIR10)
Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, &#945;-amyrin and bauerenol, this enzyme was also shown to produce two <i>seco</i>-triterpenes: &#945;- and &#946;-<i>seco</i>-amyrin.
Computational
Description (TAIR10)
Terpenoid cyclases family protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: baruol synthase 1 (TAIR:AT4G15370.1); Has 1985 Blast hits to 1925 proteins in 565 species: Archae - 4; Bacteria - 842; Metazoa - 93; Fungi - 239; Plants - 602; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78500-MONOMEREC:5.4.99.52EC:5.4.99.54eggNOG:COG1657
eggNOG:KOG0497EMBL:AB274959EMBL:AC007260EMBL:CP002684
EnsemblPlants:AT1G78500EnsemblPlants:AT1G78500.1entrez:844186Gene3D:1.50.10.20
GeneID:844186Genevisible:Q9SYN1GO:GO:0031559GO:GO:0042299
Gramene:AT1G78500.1gramene_pathway:5.4.99.-gramene_pathway:PWY-112hmmpanther:PTHR11764
hmmpanther:PTHR11764:SF16HOGENOM:HOG000234317InParanoid:Q9SYN1InterPro:IPR002365
InterPro:IPR008930InterPro:IPR018333InterPro:IPR032696InterPro:IPR032697
KEGG:ath:AT1G78500KO:K16204OMA:YIESFQMPaxDb:Q9SYN1
Pfam:PF13243Pfam:PF13249Pfam:Q9SYN1PhylomeDB:Q9SYN1
PIR:E96813PRIDE:Q9SYN1PRO:PR:Q9SYN1PROSITE:PS01074
ProteinModelPortal:Q9SYN1Proteomes:UP000006548RefSeq:NP_177971.1scanprosite:PS01074
SMR:Q9SYN1STRING:3702.AT1G78500.1SUPFAM:SSF48239TAIR:AT1G78500
TIGRfam:TIGR01787TIGRFAMs:TIGR01787UniGene:At.52557UniProt:Q9SYN1
Coordinates (TAIR10) chr1:+:29531646..29535177
Molecular Weight (calculated) 88452.00 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.28
Length 767 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRLKIGAKG GDETHLFTTN NYTGRQTWEF DADACSPEEL AEVDEARQNF SINRSRFKIS ADLLWRMQFL REKKFEQKIP RVEIGDAENI TYKDAKTALR
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)