AT1G03890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.808 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RmlC-like cupins superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 1003 Blast hits to 963 proteins in 175 species: Archae - 0; Bacteria - 136; Metazoa - 2; Fungi - 2; Plants - 862; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:989250..990908 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49677.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHKLLFSLLS VVSLSFLLFF HGAEARQREA PFPNACHFSQ INSLAPAQAT KFEAGQMEVW DHMSPELRCA GVTVARITLQ PNSIFLPAFF SPPALAYVVQ 101: GEGVMGTIAS GCPETFAEVE GSSGRGGGGD PGRRFEDMHQ KLENFRRGDV FASLAGVSQW WYNRGDSDAV IVIVLDVTNR ENQLDQVPRM FQLAGSRTQE 201: EEQPLTWPSG NNAFSGFDPN IIAEAFKINI ETAKQLQNQK DNRGNIIRAN GPLHFVIPPP REWQQDGIAN GIEETYCTAK IHENIDDPER SDHFSTRAGR 301: ISTLNSLNLP VLRLVRLNAL RGYLYSGGMV LPQWTANAHT VLYVTGGQAK IQVVDDNGQS VFNEQVGQGQ IIVIPQGFAV SKTAGETGFE WISFKTNDNA 401: YINTLSGQTS YLRAVPVDVI KASYGVNEEE AKRIKFSQQE TMLSMTPSSS S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)