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AT4G26740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.913
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : seed gene 1
Curator
Summary (TAIR10)
Encodes caleosin, a 27-kDa protein found within seed lipid bodies. Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. Catalyze hydroperoxide-dependent mono-oxygenation reactions. Require calcium for peroxygenase activity. Probably deeply buried in lipid droplets or microsomes.
Computational
Description (TAIR10)
seed gene 1 (ATS1); FUNCTIONS IN: heme oxygenase (decyclizing) activity, linoleic acid epoxygenase activity, monooxygenase activity, calcium ion binding; INVOLVED IN: oxylipin biosynthetic process, lipid particle organization, defense response, embryo development ending in seed dormancy; LOCATED IN: integral to membrane; EXPRESSED IN: embryo; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-15999BioGrid:14068EC:1.11.2.3eggNOG:ENOG410IVG5
eggNOG:ENOG4111R51EMBL:AF067857EMBL:AL035440EMBL:AL161565
EMBL:AY063885EMBL:CP002687EnsemblPlants:AT4G26740EnsemblPlants:AT4G26740.1
entrez:828781GeneID:828781Genevisible:O81270GO:GO:0004392
GO:GO:0004497GO:GO:0005509GO:GO:0005783GO:GO:0005811
GO:GO:0006952GO:GO:0009793GO:GO:0016021GO:GO:0031090
GO:GO:0031408GO:GO:0034389GO:GO:0071614GO:GO:1990137
Gramene:AT4G26740.1hmmpanther:PTHR31495HOGENOM:HOG000217500InParanoid:O81270
InterPro:IPR007736iPTMnet:O81270KEGG:00073+1.11.2.3KEGG:ath:AT4G26740
KO:K17991OMA:TEMMERDPaxDb:O81270Pfam:O81270
Pfam:PF05042PhylomeDB:O81270PIR:T04797PRIDE:O81270
PRO:PR:O81270ProteinModelPortal:O81270Proteomes:UP000006548RefSeq:NP_194404.1
STRING:3702.AT4G26740.1TAIR:AT4G26740tair10-symbols:ATPXG1tair10-symbols:ATS1
tair10-symbols:CLO1TMHMM:TMhelixUniGene:At.27433UniProt:O81270
Coordinates (TAIR10) chr4:-:13473791..13475278
Molecular Weight (calculated) 28039.50 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.29
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSKTEMMER DAMATVAPYA PVTYHRRARV DLDDRLPKPY MPRALQAPDR EHPYGTPGHK NYGLSVLQQH VSFFDIDDNG IIYPWETYSG LRMLGFNIIG
101: SLIIAAVINL TLSYATLPGW LPSPFFPIYI HNIHKSKHGS DSKTYDNEGR FMPVNLELIF SKYAKTLPDK LSLGELWEMT EGNRDAWDIF GWIAGKIEWG
201: LLYLLARDEE GFLSKEAIRR CFDGSLFEYC AKIYAGISED KTAYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)