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AT1G62290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Saposin-like aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Saposin-like aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, seedling growth, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartic proteinase A1 (TAIR:AT1G11910.1); Has 7282 Blast hits to 5100 proteins in 420 species: Archae - 0; Bacteria - 6; Metazoa - 4064; Fungi - 1685; Plants - 579; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G62290-MONOMERBioCyc:ARA:GQT-1811-MONOMEREC:3.4.23.-eggNOG:ENOG410XNV7
eggNOG:KOG1339EMBL:AC000375EMBL:AK317285EMBL:AY070453
EMBL:AY142687EMBL:CP002684EnsemblPlants:AT1G62290EnsemblPlants:AT1G62290.1
EnsemblPlants:AT1G62290.2entrez:842526Gene3D:1.10.225.10Gene3D:2.40.70.10
GeneID:842526Genevisible:Q8VYL3GO:GO:0004190GO:GO:0005773
GO:GO:0006508GO:GO:0006629GO:GO:0030163Gramene:AT1G62290.1
Gramene:AT1G62290.2hmmpanther:PTHR13683hmmpanther:PTHR13683:SF286HOGENOM:HOG000197681
InParanoid:Q8VYL3InterPro:IPR001461InterPro:IPR001969InterPro:IPR007856
InterPro:IPR008138InterPro:IPR008139InterPro:IPR011001InterPro:IPR021109
InterPro:IPR033121iPTMnet:Q8VYL3KEGG:ath:AT1G62290KO:K08245
MEROPS:A01.A02OMA:TNFMDAQPANTHER:PTHR13683PaxDb:Q8VYL3
Pfam:PF00026Pfam:PF03489Pfam:PF05184Pfam:Q8VYL3
Pfscan:PS50015Pfscan:PS51767PhylomeDB:Q8VYL3PIR:E96649
PRIDE:Q8VYL3PRINTS:PR00792PRO:PR:Q8VYL3PROSITE:PS00141
PROSITE:PS50015PROSITE:PS51767ProteinModelPortal:Q8VYL3Proteomes:UP000006548
Reactome:R-ATH-2132295RefSeq:NP_001031219.1RefSeq:NP_176419.2scanprosite:PS00141
SMART:SM00741SMR:Q8VYL3STRING:3702.AT1G62290.1SUPFAM:SSF47862
SUPFAM:SSF50630TAIR:AT1G62290TMHMM:TMhelixUniGene:At.23367
UniProt:Q8VYL3
Coordinates (TAIR10) chr1:-:23010107..23012681
Molecular Weight (calculated) 55751.40 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.07
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVYSRAVAF SVFVSFLLFF TAYSKRNDGT FRVGLKKLKL DPNNRLATRF GSKQEEALRS SLRSYNNNLG GDSGDADIVP LKNYLDAQYY GEIAIGTPPQ
101: KFTVIFDTGS SNLWVPSGKC FFSLSCYFHA KYKSSRSSTY KKSGKRAAIH YGSGSISGFF SYDAVTVGDL VVKDQEFIET TSEPGLTFLV AKFDGLLGLG
201: FQEIAVGNAT PVWYNMLKQG LIKRPVFSFW LNRDPKSEEG GEIVFGGVDP KHFRGEHTFV PVTQRGYWQF DMGEVLIAGE STGYCGSGCS AIADSGTSLL
301: AGPTAVVAMI NKAIGASGVV SQQCKTVVDQ YGQTILDLLL AETQPKKICS QIGLCAYDGT HGVSMGIESV VDKENTRSSS GLRDAGCPAC EMAVVWIQSQ
401: LRQNMTQERI VNYINEICER MPSPNGESAV DCSQLSKMPT VSFTIGGKVF DLAPEEYVLK IGEGPVAQCI SGFTALDIPP PRGPLWILGD VFMGKYHTVF
501: DFGNEQVGFA EAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)