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AT5G03860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24130194 (2013): peroxisome
  • PMID:19334764 (2009): plasma membrane
  • PMID:14581625 (2003): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : malate synthase
Curator
Summary (TAIR10)
Encodes a protein with malate synthase activity.
Computational
Description (TAIR10)
malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; EXPRESSED IN: seed, leaf; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1825-MONOMERBioCyc:MetaCyc:AT5G03860-MONOMERBioGrid:16966EC:2.3.3.9
eggNOG:COG2225eggNOG:KOG1261EMBL:AB005235EMBL:AF360126
EMBL:AL162873EMBL:AY051027EMBL:CP002688EnsemblPlants:AT5G03860
EnsemblPlants:AT5G03860.1EnsemblPlants:AT5G03860.2entrez:831690GeneID:831690
Genevisible:Q9LZC3GO:GO:0004474GO:GO:0005737GO:GO:0006097
GO:GO:0006099GO:GO:0009514Gramene:AT5G03860.1Gramene:AT5G03860.2
gramene_pathway:2.3.3.9gramene_pathway:GLYOXDEG-PWYgramene_pathway:GLYOXYLATE-BYPASShmmpanther:PTHR21631
hmmpanther:PTHR21631:SF1HOGENOM:HOG000238464InParanoid:Q9LZC3InterPro:IPR001465
InterPro:IPR006252InterPro:IPR011076InterPro:IPR019830KEGG:00620+2.3.3.9
KEGG:00630+2.3.3.9KEGG:ath:AT5G03860KO:K01638OMA:ECRRVEI
PaxDb:Q9LZC3Pfam:PF01274Pfam:Q9LZC3PhylomeDB:Q9LZC3
PIR:T48413PIRSF:PIRSF001363PRIDE:Q9LZC3PRO:PR:Q9LZC3
PROSITE:PS00510ProteinModelPortal:Q9LZC3Proteomes:UP000006548RefSeq:NP_001190219.1
RefSeq:NP_196006.1scanprosite:PS00510SMR:Q9LZC3STRING:3702.AT5G03860.1
SUPFAM:SSF51645TAIR:AT5G03860tair10-symbols:MLSTIGRfam:TIGR01344
TIGRFAMs:TIGR01344UniGene:At.4884UniPathway:UPA00703UniProt:Q9LZC3
Coordinates (TAIR10) chr5:-:1032276..1034527
Molecular Weight (calculated) 63890.80 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.35
Length 562 amino acids
Sequence (TAIR10)
(BLAST)
001: MELETSVYRP NVAVYDSPDG VEVRGRYDQI FAKILTREAL SFVAELQREF RGHVKYAMEC RREARRRYNS GAVPGFDPST KFIRDGDWSC ASVPPAVADR
101: RVEITGPVER KMIINALNSG AKVFMADFED ALSPSWENLM RGHVNLKDAV DGSITFHDKS RNRVYKLNDQ TAKLFVRPRG WHLPEAHILI DGEPATGCLV
201: DFGLYFFHNY AKFRQTQGSG FGPFFYLPKM EHSREAKIWN SVFERAEKMA GIERGSIRAT VLIETLPAVF QMNEILYELR DHSVGLNCGR WDYIFSYVKT
301: FQAHPDRLLP DRVLVGMGQH FMRSYSDLLI RTCHKRGVHA MGGMAAQIPI RDDPKANEMA LDLVRKDKLR EVRAGHDGTW AAHPGLIPIC MEAFTGHMGK
401: SPNQIKSVKR EDAAAITEED LLQIPRGVRT LEGLRLNTRV GIQYLAAWLT GSGSVPLYNL MEDAATAEIS RVQNWQWIRY GVELDGDGLG VRVSKELFGR
501: VVEEEMERIE KEVGKDKFKN GMYKEACKMF TKQCTAPELD DFLTLAVYNH IVAHYPINVS RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)