AT3G14450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CTC-interacting domain 9 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CTC-interacting domain 9 (CID9); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 8 (TAIR:AT1G53650.2); Has 3508 Blast hits to 2820 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 1915; Fungi - 426; Plants - 863; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4849788..4851601 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36548.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 327 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATVTEMPTD VVVVDDVKEV STKSEKIIDE GIEKSSITDS KTETESRLDM HKLVAMFKKL NPLAKEFFPS YYDPKKNNQV AKANQFLPAD DFETTKKQSG 101: EEFDLDAKKD DNTRKRRNYS QGRRRLTGRI SKAQREDSIR RTVYVSDIDQ SVTEEGLAGL FSNCGQVVDC RICGDPHSVL RFAFVEFADD QGAHEALSLG 201: GTMLGFYPVR VLPSKTAILP VNPTFLPRSE DEREMCTRTI YCTNIDKKVS QADVRNFFES ACGEVTRLRL LGDQLHSTRI AFVEFALADS ALSALNCSGM 301: VVGSQPIRVS PSKTPVRPRI TRPPSTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)