AT1G16750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G13000.2); Has 699 Blast hits to 674 proteins in 105 species: Archae - 2; Bacteria - 80; Metazoa - 34; Fungi - 2; Plants - 533; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5729221..5731689 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59649.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 529 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGDSLLTSK QGGGSLSIYS QPKNVTKEFN GRDSPKNSKF HHYRFELEHD VKRLKNQLQK ETAMRALLLK ASDQSHKIEL SHASSLPRSV QELLTNIAAM 101: EATVSKLEQE IMSLHFLLIQ ERNERKLAEY NLTHSLSPPN ALDLVRLSEK NESLRPKDHK AQPRSKVAKS LQSFDNANEL SKEMIRCMRN IFVSLGETSA 201: GSKSSQETAS VSSRENPPSS STSWWSPSEH SRISRWAQSP RIDIQKNSDV LATESDVFDL YTVQGKLSWA DIGSYRSATE VASMSVEEKR LGYASDELWR 301: FRNLVERLAR VNPAELSHNE KLAFWINIYN AMIMHAYLAY GVPKTDLKLF SLMQKAAYTV GGHSYNAATI EYMTLKMSPP LHRPQIALLL SILKLKVSDE 401: QRQAGISTPE PLVSFALSCG MHSSPAVRIY SAENVGEELE EAQKDYIQAS VGVSPRGKLI VPQMLHCFAK KSVDDCKVAL WISRHLPPRQ AAFVEQCIHR 501: RQWWGFLGSS SSKCGIVPFD SRFRYLFLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)