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AT3G47600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 94
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB94).
Computational
Description (TAIR10)
myb domain protein 94 (MYB94); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 8929 Blast hits to 8284 proteins in 552 species: Archae - 0; Bacteria - 0; Metazoa - 836; Fungi - 491; Plants - 5808; Viruses - 4; Other Eukaryotes - 1790 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AL132955EMBL:AY519595
EMBL:BT002802EMBL:BT004361EMBL:CP002686EnsemblPlants:AT3G47600
EnsemblPlants:AT3G47600.1entrez:823914Gene3D:1.10.10.60GeneID:823914
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009651
GO:GO:0009723GO:GO:0009733GO:GO:0009737GO:GO:0009751
GO:GO:0009753GO:GO:0046686GO:GO:0080167Gramene:AT3G47600.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF491IntAct:Q9SN78InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G47600KO:K09422
OMA:CDSTINNPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SN78
PIR:T45720PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_190344.1
SMART:SM00717SMR:Q9SN78STRING:3702.AT3G47600.1SUPFAM:SSF46689
TAIR:AT3G47600tair10-symbols:ATMYB94tair10-symbols:ATMYBCP70tair10-symbols:MYB94
UniGene:At.21591UniProt:Q9SN78
Coordinates (TAIR10) chr3:-:17539627..17541035
Molecular Weight (calculated) 37145.50 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.68
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)