AT5G62470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 96 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. Mediates abscisic acid signaling during drought stress response. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 96 (MYB96); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 94 (TAIR:AT3G47600.1); Has 9954 Blast hits to 8500 proteins in 570 species: Archae - 0; Bacteria - 56; Metazoa - 1034; Fungi - 580; Plants - 5890; Viruses - 6; Other Eukaryotes - 2388 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25079434..25080858 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39033.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRCSK SCRLRWTNYL RPGIKRGNFT EHEEKTIVHL QALLGNRWAA IASYLPERTD 101: NDIKNYWNTH LKKKLKKINE SGEEDNDGVS SSNTSSQKNH QSTNKGQWER RLQTDINMAK QALCEALSLD KPSSTLSSSS SLPTPVITQQ NIRNFSSALL 201: DRCYDPSSSS SSTTTTTTSN TTNPYPSGVY ASSAENIARL LQDFMKDTPK ALTLSSSSPV SETGPLTAAV SEEGGEGFEQ SFFSFNSMDE TQNLTQETSF 301: FHDQVIKPEI TMDQDHGLIS QGSLSLFEKW LFDEQSHEMV GMALAGQEGM F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)